Citation Impact
Citing Papers
Developmental Patterning by Mechanical Signals in Arabidopsis
2008 Science
Dual Effects of miR156-Targeted SPL Genes and CYP78A5/KLUH on Plastochron Length and Organ Size in Arabidopsis thaliana
2008
Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling
2010
The Istanbul consensus workshop on embryo assessment: proceedings of an expert meeting
2011 Standout
ImageJ2: ImageJ for the next generation of scientific image data
2017 Standout
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
2013
Towards a unifying, systems biology understanding of large-scale cellular death and destruction caused by poorly liganded iron: Parkinson’s, Huntington’s, Alzheimer’s, prions, bactericides, chemical toxicology and others as examples
2010
cPath: open source software for collecting, storing, and querying biological pathways
2006
The role of spreading depression, spreading depolarization and spreading ischemia in neurological disease
2011 Standout
Role of plant hormones in plant defence responses
2008 Standout
Large-scale gene function analysis with the PANTHER classification system
2013 Standout
Data Sharing by Scientists: Practices and Perceptions
2011 Standout
High-throughput functional annotation and data mining with the Blast2GO suite
2008 Standout
Networking by small-molecule hormones in plant immunity
2009 Standout
ROS signaling: the new wave?
2011 Standout
The Blood-Brain Barrier in Health and Chronic Neurodegenerative Disorders
2008 Standout
Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases
2009
Forces in Tissue Morphogenesis and Patterning
2013 Standout
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
2015 Standout
Auxin transport: a field in flux
2006
A survey of MRI-based medical image analysis for brain tumor studies
2013 Standout
Advances in metal-induced oxidative stress and human disease
2011 Standout
Plant hormones are versatile chemical regulators of plant growth
2009
Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution
2010
Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-Tubercular Drugs
2005
The spectrum of latent tuberculosis: rethinking the biology and intervention strategies
2009 Standout
Web Services at the European Bioinformatics Institute
2007
Exploiting and engineering hemoproteins for abiological carbene and nitrene transfer reactions
2017 StandoutNobel
The march of the PINs: developmental plasticity by dynamic polar targeting in plant cells
2010
Glucose transport to the brain: A systems model
2005
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
2015 Standout
Amino acids: metabolism, functions, and nutrition
2009 Standout
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
2009
In silico analysis of arginine catabolism as a source of nitric oxide or polyamines in endothelial cells
2007
The role of iron and reactive oxygen species in cell death
2013 Standout
Fiji: an open-source platform for biological-image analysis
2012 Standout
Growth–Defense Tradeoffs in Plants: A Balancing Act to Optimize Fitness
2014 Standout
Origin, Biogenesis, and Activity of Plant MicroRNAs
2009 Standout
A Genome-Wide Analysis Indicates that Yeast Pre-mRNA Splicing Is Predominantly Posttranscriptional
2006 StandoutNobel
Salicylic acid beyond defence: its role in plant growth and development
2011 Standout
Linking Splicing to Pol II Transcription Stabilizes Pre-mRNAs and Influences Splicing Patterns
2006
Metabolic footprinting and systems biology: the medium is the message
2005
OsATG10b, an Autophagosome Component, Is Needed for Cell Survival against Oxidative Stresses in Rice
2009 StandoutNobel
The Human Microbiome Project
2007 StandoutNature
Imaging in Systems Biology
2007
Epidermis: the formation and functions of a fundamental plant tissue
2010
Limitations of mRNA amplification from small-size cell samples
2005
What is flux balance analysis?
2010 Standout
Dynamic Integration of Auxin Transport and Signalling
2006
Web services at the European Bioinformatics Institute-2009
2009
Fungal secondary metabolism — from biochemistry to genomics
2005 Standout
Current progress in patient-specific modeling
2009
The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
2013
Comparison of dorsal root ganglion gene expression in rat models of traumatic and HIV‐associated neuropathic pain
2008
Central Sensitization: A Generator of Pain Hypersensitivity by Central Neural Plasticity
2009 Standout
Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
2011 Standout
Effect of increased dosage of the ML-236B (compactin) biosynthetic gene cluster on ML-236B production in Penicillium citrinum
2002
GREAT improves functional interpretation of cis-regulatory regions
2010 Standout
Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany
2013 Standout
Arginine metabolism and nutrition in growth, health and disease
2008 Standout
Genome-scale models of bacterial metabolism: reconstruction and applications
2008
Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis
2012
Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos
2012 StandoutNobel
Multiscale Systems Analysis of Root Growth and Development: Modeling Beyond the Network and Cellular Scales
2012
Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression
2015 StandoutNobel
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
2012 Standout
Overcoming an optimization plateau in the directed evolution of highly efficient nerve agent bioscavengers
2017 StandoutNobel
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ
2016 Standout
Recycling, clustering, and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane
2011 StandoutNobel
Bisque: a platform for bioimage analysis and management
2009
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
2014
Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration
2003
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
2017 Standout
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
2015
Rules for Modeling Signal-Transduction Systems
2006
Managing and sharing experimental data: standards, tools and pitfalls
2008
Reactive species in non-equilibrium atmospheric-pressure plasmas: Generation, transport, and biological effects
2016 Standout
COPASI—a COmplex PAthway SImulator
2006 Standout
Fluorescent Sensors for Measuring Metal Ions in Living Systems
2014 Standout
Systems Approaches to Identifying Gene Regulatory Networks in Plants
2008
Microarray-Based Analysis of Microbial Community RNAs by Whole-Community RNA Amplification
2006
Conditions for the Triggering of Spreading Depression Studied With Computer Simulations
2002
The evolution and functional significance of leaf shape in the angiosperms
2011
2020 Standout
CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks
2008
Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity
2006
Systems Analysis of Shoot Apical Meristem Growth and Development: Integrating Hormonal and Mechanical Signaling
2012
The Formation and Function of Plant Cuticles
2013 Standout
Competing G protein‐coupled receptor kinases balance G protein and β‐arrestin signaling
2012 StandoutNobel
Resolution scaling in STED microscopy
2008 StandoutNobel
The world‐wide ‘fast–slow’ plant economics spectrum: a traits manifesto
2014 Standout
Auxin: The Looping Star in Plant Development
2008
International Community Consensus Standard for Reporting Derivation of Human Embryonic Stem Cell Lines
2007
Reactive oxygen species, abiotic stress and stress combination
2016 Standout
Hormonal Modulation of Plant Immunity
2011 Standout
Works of Bruce E. Shapiro being referenced
An auxin-driven polarized transport model for phyllotaxis
2006
MathSBML: a package for manipulating SBML-based biological models
2004
Reproducibility, Fidelity, and Discriminant Validity of mRNA Amplification for Microarray Analysis from Primary Hematopoietic Cells
2005
Osmotic Forces and Gap Junctions in Spreading Depression: A Computational Model
2001
A Mathematical Model for the Branched Chain Amino Acid Biosynthetic Pathways of Escherichia coli K12
2005
An enzyme mechanism language for the mathematical modeling of metabolic pathways
2004
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project
2004
Minimum information requested in the annotation of biochemical models (MIRIAM)
2005
Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem
2005
Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations
2003
Ergosterol and Lanosterol from Aspergillus nidulans
1982