Citation Impact
Citing Papers
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
Individual intestinal symbionts induce a distinct population of RORγ + regulatory T cells
2015 Science
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
2014 Standout
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
A survey of best practices for RNA-seq data analysis
2016 Standout
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
2015 Standout
Normalization and microbial differential abundance strategies depend upon data characteristics
2017
Reducing cell intrinsic immunity to mRNA vaccine alters adaptive immune responses in mice
2023 StandoutNobel
jvenn: an interactive Venn diagram viewer
2014 Standout
A comparison of methods for differential expression analysis of RNA-seq data
2013
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
2013
NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data
2013
EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering
2015
Transcriptional and epigenetic basis of Treg cell development and function: its genetic anomalies or variations in autoimmune diseases
2020 StandoutNobel
A pupal transcriptomic screen identifies Ral as a target of store-operated calcium entry in Drosophila neurons
2017 StandoutNobel
TCC: an R package for comparing tag count data with robust normalization strategies
2013
The characteristic direction: a geometrical approach to identify differentially expressed genes
2014
Determining cell type abundance and expression from bulk tissues with digital cytometry
2019 Standout
Transcriptional architecture of the mammalian circadian clock
2016 Standout
The Mechanosensitive Ion Channel Piezo Inhibits Axon Regeneration
2019 StandoutNobel
A microRNA family exerts maternal control on sex determination in C. elegans
2017 StandoutNobel
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
2019
The microbiota in adaptive immune homeostasis and disease
2016 StandoutNature
Regulation of microRNA biogenesis
2014 Standout
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
N6-methyladenosine Modulates Messenger RNA Translation Efficiency
2015 Standout
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
2014
Microbiome Datasets Are Compositional: And This Is Not Optional
2017 Standout
Normalization of RNA-seq data using factor analysis of control genes or samples
2014
Andrographolide interferes quorum sensing to reduce cell damage caused by avian pathogenic Escherichia coli
2014
Human housekeeping genes, revisited
2013
Quantitative bacterial transcriptomics with RNA-seq
2014
RNA-Seq and Expression Arrays: Selection Guidelines for Genome-Wide Expression Profiling
2018
Quantitative profiling of initiating ribosomes in vivo
2014
The landscape of long noncoding RNAs in the human transcriptome
2015 Standout
The complex microbiota of raw milk
2013 Standout
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
2019 Standout
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
2011 Standout
Rapid Short-Read Sequencing and Aneuploidy Detection Using MinION Nanopore Technology
2015
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
Environmental factors influencing the development and spread of antibiotic resistance
2017 Standout
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System
2013 Standout
ROTS: reproducible RNA-seq biomarker detector—prognostic markers for clear cell renal cell cancer
2015
Bioinformatic challenges for DNA metabarcoding of plants and animals
2012
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
2015 Standout
Liquid biopsies come of age: towards implementation of circulating tumour DNA
2017 Standout
Antibiotic resistance in the environment
2021 Standout
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
PTPN2 links colonic and joint inflammation in experimental autoimmune arthritis
2020 StandoutNobel
Optimal Scaling of Digital Transcriptomes
2013
Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
2014
Near-optimal probabilistic RNA-seq quantification
2016 Standout
Normalizing single-cell RNA sequencing data: challenges and opportunities
2017
Phosphorylation of DGCR8 Increases Its Intracellular Stability and Induces a Progrowth miRNA Profile
2013
The Top 10 fungal pathogens in molecular plant pathology
2012 Standout
Next generation sequencing of sex-specific genes in the livers of obese ZSF1 rats
2015
The Calcium Channel Subunit Alpha2delta2 Suppresses Axon Regeneration in the Adult CNS
2016
Wheat leaf rust caused by Puccinia triticina
2008
Human FOXP3+ Regulatory T Cell Heterogeneity and Function in Autoimmunity and Cancer
2019 StandoutNobel
Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
2015
Identification of copy number variants in whole-genome data using Reference Coverage Profiles
2015 StandoutNobel
Regulatory T Cells and Human Disease
2020 StandoutNobel
Climate change and interconnected risks to sustainable development in the Mediterranean
2018 Standout
Overview of pharmacological activities ofAndrographis paniculataand its major compound andrographolide
2018 Standout
Sex and Gender Differences in Risk, Pathophysiology and Complications of Type 2 Diabetes Mellitus
2016 Standout
Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan
2014 StandoutScienceNobel
MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale
2014
Climate, environmental and socio-economic change: weighing up the balance in vector-borne disease transmission
2015
Control of foreign Ag‐specific Ab responses by Treg and Tfr
2020 StandoutNobel
A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA
2022 StandoutNobel
Measurement of Organ-Specific and Acute-Phase Blood Protein Levels in Early Lyme Disease
2019 StandoutNobel
Using metagenomics to investigate human and environmental resistomes
2017
A broken promise: microbiome differential abundance methods do not control the false discovery rate
2017
A Genome-Wide Survey of Sexually Dimorphic Expression of Drosophila miRNAs Identifies the Steroid Hormone-Induced miRNA let-7 as a Regulator of Sexual Identity
2014
A general species delimitation method with applications to phylogenetic placements
2013 Standout
MultiQC: summarize analysis results for multiple tools and samples in a single report
2016 Standout
A distinct subpopulation of CD25−T-follicular regulatory cells localizes in the germinal centers
2017 StandoutNobel
Comparison of software packages for detecting differential expression in RNA-seq studies
2013
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Postgenomic Analysis of Streptococcus thermophilus Cocultivated in Milk with Lactobacillus delbrueckii subsp. bulgaricus : Involvement of Nitrogen, Purine, and Iron Metabolism
2008
Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing
2014
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Brigitte Schaeffer being referenced
DNA barcode analysis: a comparison of phylogenetic and statistical classification methods
2009
Using a climate-dependent model to predict mosquito abundance: Application to Aedes (Stegomyia) africanus and Aedes (Diceromyia) furcifer (Diptera: Culicidae)
2007
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
2012
Statistics for proteomics: Experimental design and 2-DE differential analysis
2006
Diagnostic Strategy for Identifying Avian Pathogenic Escherichia coli Based on Four Patterns of Virulence Genes
2012
Distribution of Pathotypes with Regard to Host Cultivars in French Wheat Leaf Rust Populations
2006