Citation Impact
Citing Papers
Widespread RNA and DNA Sequence Differences in the Human Transcriptome
2011 Science
Optimal Dissociation Methods Differ for N - and O -Glycopeptides
2020 StandoutNobel
Surfaceome Profiling Reveals Regulators of Neural Stem Cell Function
2013
Scalable Data Analysis in Proteomics and Metabolomics Using BioContainers and Workflows Engines
2019
Proximity interactions of the ubiquitin ligase Mind bomb 1 reveal a role in regulation of epithelial polarity complex proteins
2019
The substrate degradome of meprin metalloproteases reveals an unexpected proteolytic link between meprin β and ADAM10
2012
Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry
2011
Computationally designed sensors detect endogenous Ras activity and signaling effectors at subcellular resolution
2024 StandoutNobel
Proteomics data repositories: Providing a safe haven for your data and acting as a springboard for further research
2010
Reading the glyco-code: New approaches to studying protein–carbohydrate interactions
2022 StandoutNobel
The Mtb Proteome Library: A Resource of Assays to Quantify the Complete Proteome of Mycobacterium tuberculosis
2013
MassChroQ: A versatile tool for mass spectrometry quantification
2011
Natural products: A continuing source of novel drug leads
2013 Standout
Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
2012
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
2016 Standout
Multi-input chemical control of protein dimerization for programming graded cellular responses
2019 StandoutNobel
Mechanism and Regulation of NLRP3 Inflammasome Activation
2016 Standout
The NLRP3 inflammasome: molecular activation and regulation to therapeutics
2019 Standout
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
2012 Standout
Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes
2020
A computationally engineered RAS rheostat reveals RAS–ERK signaling dynamics
2016 StandoutNobel
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
2011 Standout
O-Pair Search with MetaMorpheus for O-glycopeptide characterization
2020 StandoutNobel
Isotope-targeted glycoproteomics (IsoTaG): a mass-independent platform for intact N- and O-glycopeptide discovery and analysis
2015 StandoutNobel
Whither Ribosome Structure and Dynamics Research? (A Perspective)
2016 StandoutNobel
The molecular machinery of regulated cell death
2019 Standout
MS-GF+ makes progress towards a universal database search tool for proteomics
2014
LYTACs that engage the asialoglycoprotein receptor for targeted protein degradation
2021 StandoutNobel
Data standards can boost metabolomics research, and if there is a will, there is a way
2015
Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometry
2020 StandoutNobel
Pyroptosis: mechanisms and diseases
2021 Standout
Meta-omic Characterization of the Marine Invertebrate Microbial Consortium That Produces the Chemotherapeutic Natural Product ET-743
2011
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Measuring the multifaceted roles of mucin-domain glycoproteins in cancer
2022 StandoutNobel
Revealing the human mucinome
2022 StandoutNobel
mzML—a Community Standard for Mass Spectrometry Data
2010
Quantitative Mass Spectrometry Reveals Dynamics of Factor-inhibiting Hypoxia-inducible Factor-catalyzed Hydroxylation
2011 StandoutNobel
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
2015 Standout
Remodelling the extracellular matrix in development and disease
2014 Standout
2016 update of the PRIDE database and its related tools
2015 Standout
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
2012 Standout
Metabolomics: beyond biomarkers and towards mechanisms
2016 Standout
Inflammasomes: mechanism of assembly, regulation and signalling
2016 Standout
Inflammasome-activated gasdermin D causes pyroptosis by forming membrane pores
2016 StandoutNature
A Mass Spectrometric-Derived Cell Surface Protein Atlas
2015
Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells
2012
Mechanism of Cisplatin-Induced Cytotoxicity Is Correlated to Impaired Metabolism Due to Mitochondrial ROS Generation
2015
Metabolically Activated Adipose Tissue Macrophages Perform Detrimental and Beneficial Functions during Diet-Induced Obesity
2017
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics
2020 StandoutNobel
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics
2017
Mass spectrometry-based proteomics for systems biology
2011
Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis
2015
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
2014 Standout
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
2013 Nature
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
Gasdermins: Effectors of Pyroptosis
2017 Standout
ROS and the DNA damage response in cancer
2018 Standout
A Face in the Crowd: Recognizing Peptides Through Database Search
2011
Trans‐Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets
2010
The neXtProt knowledgebase on human proteins: current status
2015
Analyzing nested experimental designs—A user-friendly resampling method to determine experimental significance
2022 StandoutNobel
A Guide to Mass Spectrometry-Based Quantitative Proteomics
2018
Gasdermin D is an executor of pyroptosis and required for interleukin-1β secretion
2015 Standout
The complete structure of the large subunit of the mammalian mitochondrial ribosome
2014 Nature
Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany
2013 Standout
iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
2011
Classification of Tandem Mass Spectra for Identification of N- and O-linked Glycopeptides
2016
Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database
2012
Fusobacterium nucleatum — symbiont, opportunist and oncobacterium
2018 Standout
Mass spectrometry–based proteomics in cell biology
2010
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project
2020
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes
2016 Standout
Mechanisms of Insulin Action and Insulin Resistance
2018 Standout
Molecular mechanisms and functions of pyroptosis, inflammatory caspases and inflammasomes in infectious diseases
2017 Standout
The protein expression landscape of the Arabidopsis root
2012
The NLRP3 Inflammasome: An Overview of Mechanisms of Activation and Regulation
2019 Standout
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
Protein Analysis by Shotgun/Bottom-up Proteomics
2013
Protein kinase A–dependent phosphorylation stimulates the transcriptional activity of hypoxia-inducible factor 1
2016 StandoutNobel
IQuant: An automated pipeline for quantitative proteomics based upon isobaric tags
2014
2012
Enhanced Global Post-translational Modification Discovery with MetaMorpheus
2018
Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
2014
Algorithms and design strategies towards automated glycoproteomics analysis
2016
Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics
2015
An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics
2013
Glycobioinformatics: Current strategies and tools for data mining in MS ‐based glycoproteomics
2012
E3 ubiquitin ligase Mindbomb 1 facilitates nuclear delivery of adenovirus genomes
2020 StandoutNobel
Comparative Analysis of Different Label-Free Mass Spectrometry Based Protein Abundance Estimates and Their Correlation with RNA-Seq Gene Expression Data
2012
Proteomics of Fusobacterium nucleatum within a model developing oral microbial community
2014
Chemical Glycoproteomics
2016 StandoutNobel
Works of Brian Pratt being referenced
A guided tour of the Trans‐Proteomic Pipeline
2010
Numerical Compression Schemes for Proteomics Mass Spectrometry Data
2014
PepC: proteomics software for identifying differentially expressed proteins based on spectral counting
2010
Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping
2019