Standout Papers
Citation Impact
Citing Papers
An enumerative algorithm for de novo design of proteins with diverse pocket structures
2020 StandoutNobel
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN
2018 Science
Comprehensive computational design of ordered peptide macrocycles
2017 StandoutScienceNobel
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Computational design of closely related proteins that adopt two well-defined but structurally divergent folds
2020 StandoutNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Hallucinating symmetric protein assemblies
2022 StandoutScienceNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
Rapid and automated design of two-component protein nanomaterials using ProteinMPNN
2024 StandoutNobel
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Computational Stabilization of a Non‐Heme Iron Enzyme Enables Efficient Evolution of New Function
2024 StandoutNobel
Hierarchical design of pseudosymmetric protein nanocages
2024 StandoutNatureNobel
Expansive discovery of chemically diverse structured macrocyclic oligoamides
2024 StandoutScienceNobel
Incorporation of sensing modalities into de novo designed fluorescence-activating proteins
2021 StandoutNobel
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
A suite of designed protein cages using machine learning and protein fragment-based protocols
2024
Recent advances in de novo protein design: Principles, methods, and applications
2021
De novo design of allosterically switchable protein assemblies
2024 StandoutNatureNobel
De novo design of immunoglobulin-like domains
2022 StandoutNobel
Accurate de novo design of heterochiral protein–protein interactions
2024 StandoutNobel
Enhancing extracellular vesicle cargo loading and functional delivery by engineering protein-lipid interactions
2024 StandoutNobel
HMMER web server: interactive sequence similarity searching
2011 Standout
Hydrophobic mismatch drives self-organization of designer proteins into synthetic membranes
2024 StandoutNobel
Pfam: the protein families database
2013 Standout
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
Improving de novo protein binder design with deep learning
2023 StandoutNobel
Accurate design of co-assembling multi-component protein nanomaterials
2014 StandoutNatureNobel
The road to fully programmable protein catalysis
2022 StandoutNatureNobel
Chemical shift-based methods in NMR structure determination
2018
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
The RCSB Protein Data Bank: redesigned web site and web services
2010
A structure-based computational workflow to predict liability and binding modes of small molecules to hERG
2020 StandoutNobel
Advances in protein structure prediction and design
2019
The carbohydrate-active enzymes database (CAZy) in 2013
2013 Standout
Improved protein structure refinement guided by deep learning based accuracy estimation
2021 StandoutNobel
The RCSB Protein Data Bank: new resources for research and education
2012
The coming of age of de novo protein design
2016 StandoutNatureNobel
The computational prediction of protein assemblies
2017
Design of multi-scale protein complexes by hierarchical building block fusion
2021 StandoutNobel
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity
2024 StandoutNobel
Antibody modeling using the Prediction of ImmunoGlobulin Structure (PIGS) web server
2014
The emerging role of computational design in peptide macrocycle drug discovery
2020
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Constructing arrays of proteins
2013
Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus
2017 StandoutNobel
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1
2021 StandoutNobel
The Crucial Role of Methodology Development in Directed Evolution of Selective Enzymes
2019
Computational design of mechanically coupled axle-rotor protein assemblies
2022 StandoutScienceNobel
De novo design of small beta barrel proteins
2023 StandoutNobel
Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein
2019 StandoutNobel
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
2017 StandoutNobel
Large-scale determination of previously unsolved protein structures using evolutionary information
2015 StandoutNobel
Directed evolution methods for overcoming trade‐offs between protein activity and stability
2019
Structural basis for Zika envelope domain III recognition by a germline version of a recurrent neutralizing antibody
2020 StandoutNobel
Validation of de novo designed water‐soluble and transmembrane β‐barrels by in silico folding and melting
2024
Sequence co-evolution gives 3D contacts and structures of protein complexes
2014
Design of Heme Enzymes with a Tunable Substrate Binding Pocket Adjacent to an Open Metal Coordination Site
2023 StandoutNobel
Reconfigurable asymmetric protein assemblies through implicit negative design
2022 StandoutScienceNobel
Works of Brian D. Weitzner being referenced
An Integrated Framework Advancing Membrane Protein Modeling and Design
2015
Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2
2011
A Framework to Simplify Combined Sampling Strategies in Rosetta
2015
Will Widgets and Semantic Tagging Change Computational Biology?
2010
Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites
2021 StandoutNobel
Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)
2013
Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization
2014
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
2018
A computational method for design of connected catalytic networks in proteins
2019 StandoutNobel
Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation
2019