Citation Impact
Citing Papers
A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
2020 Standout
Patterned progression of bacterial populations in the premature infant gut
2014
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
2019 Standout
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
2018
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
2018 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Sorption-desorption and biodegradation of sulfometuron-methyl and its effects on the bacterial communities in Amazonian soils amended with aged biochar
2020
Metagenomic reconstructions of gut microbial metabolism in weanling pigs
2019
Improved metagenomic analysis with Kraken 2
2019 Standout
ColabFold: making protein folding accessible to all
2022 Standout
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
2018 Standout
Role of the normal gut microbiota
2015 Standout
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
2019
Microbiota of the indoor environment: a meta-analysis
2015
Landscape topography structures the soil microbiome in arctic polygonal tundra
2018
Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study
2016
The soil microbiome — from metagenomics to metaphenomics
2018
Gut microbiota functions: metabolism of nutrients and other food components
2017 Standout
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019
mixOmics: An R package for ‘omics feature selection and multiple data integration
2017 Standout
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
Gut biogeography of the bacterial microbiota
2015 Standout
Microbiome Datasets Are Compositional: And This Is Not Optional
2017 Standout
Structural variation in the gut microbiome associates with host health
2019 Nature
Intricacies of assessing the human microbiome in epidemiologic studies
2016
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
2018 Standout
Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems
2019 StandoutNobel
Interaction between microbiota and immunity in health and disease
2020 Standout
MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities
2016
Skeletal infections: microbial pathogenesis, immunity and clinical management
2022 Standout
Gut microbiome and health: mechanistic insights
2022 Standout
Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence
2017
Shaping of Intestinal Microbiota in Nlrp6- and Rag2-Deficient Mice Depends on Community Structure
2017
Expanding the UniFrac Toolbox
2016
Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
2021 StandoutNobel
The distinction of CPR bacteria from other bacteria based on protein family content
2019
Current understanding of the human microbiome
2018 Standout
Clinical metagenomics
2019
Sensitive protein alignments at tree-of-life scale using DIAMOND
2021 Standout
Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces
2018
Microbial strain-level population structure and genetic diversity from metagenomes
2017
Gut microbiota, metabolites and host immunity
2016 Standout
Keystone taxa as drivers of microbiome structure and functioning
2018 Standout
Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
2016
Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira
2017
Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease
2016
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces
2019
Soil microbiomes and climate change
2019 Standout
Development of the preterm infant gut microbiome: a research priority
2014
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
Gut microbiota in human metabolic health and disease
2020 Standout
SARS-CoV-2 in wastewater: State of the knowledge and research needs
2020 Standout
Integrating gut microbiota immaturity and disease‐discriminatory taxa to diagnose the initiation and severity of shrimp disease
2017 Standout
Agriculture Development, Pesticide Application and Its Impact on the Environment
2021 Standout
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
The very low birth weight infant microbiome and childhood health
2015
Carrot Juice Fermentations as Man-Made Microbial Ecosystems Dominated by Lactic Acid Bacteria
2018
KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples
2018
The human gut microbiome in health: establishment and resilience of microbiota over a lifetime
2016
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota
2015
Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
2023
Aquaponic trends and challenges – A review
2019 Standout
Recommendations for design and conduct of preclinical in vivo studies of orthopedic device‐related infection
2019
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
2016
BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation
2017
Pancreas–Microbiota Cross Talk in Health and Disease
2019
The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio in the Treatment of Obesity and Inflammatory Bowel disease
2020 Standout
Metagenomics and the development of viral water quality tools
2019
Works of Brandon Brooks being referenced
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
2017
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
2017
Disturbances of the Perioperative Microbiome Across Multiple Body Sites in Patients Undergoing Pancreaticoduodenectomy
2016
Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems
2017
Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
2014
Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case
2015
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
2015