Citation Impact
Citing Papers
Particle Swarm Optimization Algorithm and Its Applications: A Systematic Review
2022 Standout
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Perturbing the energy landscape for improved packing during computational protein design
2020 StandoutNobel
A comparative study of family-specific protein–ligand complex affinity prediction based on random forest approach
2014
Computational protein–ligand docking and virtual drug screening with the AutoDock suite
2016 Standout
Bridging Molecular Docking to Molecular Dynamics in Exploring Ligand-Protein Recognition Process: An Overview
2018
A thorough benchmark of density functional methods for general main group thermochemistry, kinetics, and noncovalent interactions
2011 Standout
Computationally designed libraries for rapid enzyme stabilization
2014 StandoutNobel
In Silico Target Prediction for Small Molecules
2018
Software for molecular docking: a review
2017
The ClusPro web server for protein–protein docking
2017 Standout
Tackling the challenges posed by target flexibility in drug design
2010
GalaxyDock BP2 score: a hybrid scoring function for accurate protein–ligand docking
2017
Drug repurposing: progress, challenges and recommendations
2018 Standout
Q‐Dock: Low‐resolution flexible ligand docking with pocket‐specific threading restraints
2008
A Pareto-Optimal Refinement Method for Protein Design Scaffolds
2013 StandoutNobel
Enantioselective Enzymes by Computational Design and In Silico Screening
2015 StandoutNobel
Towards the development of universal, fast and highly accurate docking/scoring methods: a long way to go
2007
Improved low-resolution crystallographic refinement with Phenix and Rosetta
2013 StandoutNobel
Protein-Ligand Docking in the New Millennium – A Retrospective of 10 Years in the Field
2013
I-TASSER: a unified platform for automated protein structure and function prediction
2010 Standout
Molecular Docking: A Powerful Approach for Structure-Based Drug Discovery
2011 Standout
Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement
2013 StandoutNobel
Accurate design of megadalton-scale two-component icosahedral protein complexes
2016 StandoutScienceNobel
Accommodating Protein Flexibility for Structure-Based Drug Design
2011
Multi-objective ligand-protein docking with particle swarm optimizers
2018
CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge
2015 StandoutNobel
Artificial intelligence in drug discovery and development
2020 Standout
Relaxation of backbone bond geometry improves protein energy landscape modeling
2013 StandoutNobel
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings
2021 Standout
Overcoming an optimization plateau in the directed evolution of highly efficient nerve agent bioscavengers
2017 StandoutNobel
Remodeling a β-peptide bundle
2012 StandoutNobel
Large-Scale Application of High-Throughput Molecular Mechanics with Poisson−Boltzmann Surface Area for Routine Physics-Based Scoring of Protein−Ligand Complexes
2009
Molecular Docking and Structure-Based Drug Design Strategies
2015 Standout
Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design
2012
PSOVina: The hybrid particle swarm optimization algorithm for protein–ligand docking
2015
Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules
2016 StandoutNobel
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking
2021 StandoutNobel
Molecular Docking: Shifting Paradigms in Drug Discovery
2019 Standout
Design and optimization of enzymatic activity in a de novo β‐barrel scaffold
2022 StandoutNobel
The NMR–Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope
2015 StandoutNobel
Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1
2021 StandoutNobel
Modeling Reality for Optimal Docking of Small Molecules to Biological Targets
2009
AutoDock-GIST: Incorporating Thermodynamics of Active-Site Water into Scoring Function for Accurate Protein-Ligand Docking
2016
Molecular Docking: Challenges, Advances and its Use in Drug Discovery Perspective
2018 Standout
Higher-accuracy van der Waals density functional
2010 Standout
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
2017 StandoutNobel
Advances and Challenges in Protein-Ligand Docking
2010
Further analysis and comparative study of intermolecular interactions using dimers from the S22 database
2009
GalaxyDock: Protein–Ligand Docking with Flexible Protein Side-chains
2012
Enantioselective Enzymes by Computational Design and In Silico Screening
2015 StandoutNobel
Automating human intuition for protein design
2013 StandoutNobel
Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta
2015 StandoutNobel
g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations
2014 Standout
SwarmDock and the Use of Normal Modes in Protein-Protein Docking
2010
Works of Bofu Liu being referenced
SODOCK: Swarm optimization for highly flexible protein–ligand docking
2006