Citation Impact
Citing Papers
The Sequence Alignment/Map format and SAMtools
2009 Standout
RNA-Guided Human Genome Engineering via Cas9
2013 StandoutScience
Denisovan ancestry and population history of early East Asians
2020 StandoutScienceNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
Maturing Glycoproteomics Technologies Provide Unique Structural Insights into the N-glycoproteome and Its Regulation in Health and Disease
2016
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 Standout
The re-emergence of natural products for drug discovery in the genomics era
2015 Standout
SHRiMP: Accurate Mapping of Short Color-space Reads
2009
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
The genome of the offspring of a Neanderthal mother and a Denisovan father
2018 StandoutNatureNobel
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
2010 Standout
A mitochondrial genome sequence of a hominin from Sima de los Huesos
2013 StandoutNatureNobel
Mammalian microRNAs predominantly act to decrease target mRNA levels
2010 StandoutNature
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Gut metagenome in European women with normal, impaired and diabetic glucose control
2013 StandoutNature
RazerS—fast read mapping with sensitivity control
2009
A review of methods for interpretation of glycopeptide tandem mass spectral data
2015
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Liquid chromatography-tandem mass spectrometry-based fragmentation analysis of glycopeptides
2016
Fast gapped-read alignment with Bowtie 2
2012 Standout
Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins
2016 StandoutNatureNobel
Integrase-mediated spacer acquisition during CRISPR–Cas adaptive immunity
2015 StandoutNatureNobel
Inference of human population history from individual whole-genome sequences
2011 StandoutNature
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
2012 StandoutNatureNobel
Expression of distinct RNAs from 3′ untranslated regions
2010
Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade
2017 StandoutNobel
A survey of sequence alignment algorithms for next-generation sequencing
2010
Human DNA methylomes at base resolution show widespread epigenomic differences
2009 StandoutNature
Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
2016 StandoutNobel
Comprehensive Integration of Single-Cell Data
2019 Standout
Tumour evolution inferred by single-cell sequencing
2011 StandoutNature
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
2015 StandoutNature
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
CloudBurst: highly sensitive read mapping with MapReduce
2009
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
DNA analysis of an early modern human from Tianyuan Cave, China
2013 StandoutNobel
Modeling and automation of sequencing-based characterization of RNA structure
2011 StandoutNobel
Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
2011 StandoutNobel
Fast and accurate long-read alignment with Burrows–Wheeler transform
2010 Standout
Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
2014 StandoutNobel
Protein Analysis by Shotgun/Bottom-up Proteomics
2013
Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3
2018
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
2013 Standout
Cutadapt removes adapter sequences from high-throughput sequencing reads
2011 Standout
Gain-of-function mutations in the mechanically activated ion channel PIEZO2 cause a subtype of Distal Arthrogryposis
2013 StandoutNobel
Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein‐Profiling Technologies
2013
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
2018 StandoutScienceNobel
Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein‐Profiling Technologies
2005
Fast and accurate short read alignment with Burrows–Wheeler transform
2009 Standout
Copper induces cell death by targeting lipoylated TCA cycle proteins
2022 StandoutScience
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
2015 StandoutNobel
High Throughput Short Read Alignment via Bi-directional BWT
2009
PASS: a program to align short sequences
2009
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
2013 StandoutNobel
Tools for mapping high-throughput sequencing data
2012
SweetNET: A Bioinformatics Workflow for Glycopeptide MS/MS Spectral Analysis
2016
Exploring the glycoproteomics landscape with advanced MS technologies
2014
The makers of the Protoaurignacian and implications for Neandertal extinction
2015 StandoutScienceNobel
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne
2016 StandoutNobel
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
Chemical Glycoproteomics
2016 StandoutNobel
Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition
2017 StandoutNobel
Works of Bin Ma being referenced
De Novo Sequencing Methods in Proteomics
2009
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry
2003
PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification
2011
Software for computational peptide identification from MS–MS data
2006
ZOOM! Zillions of oligos mapped
2008
GlycoMaster DB: Software To Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry
2014
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery
2012