Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Seeds for effective oligonucleotide design
2011
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
2016
Improved metagenomic analysis with Kraken 2
2019 Standout
A pupal transcriptomic screen identifies Ral as a target of store-operated calcium entry in Drosophila neurons
2017 StandoutNobel
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 Standout
Infographics And Public Policy: Using Data Visualization To Convey Complex Information
2015 Standout
Frame-by-frame language identification in short utterances using deep neural networks
2014
SHRiMP: Accurate Mapping of Short Color-space Reads
2009
Multiseed Lossless Filtration
2005
Poly A- Transcripts Expressed in HeLa Cells
2008
BLAST+: architecture and applications
2009 Standout
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
2011 Standout
Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices
2009
Compressive genomics
2012
Efficient storage of high throughput DNA sequencing data using reference-based compression
2011
Circular Intronic Long Noncoding RNAs
2013 Standout
Designing Patterns and Profiles for Faster HMM Search
2008
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
Circos: An information aesthetic for comparative genomics
2009 Standout
Mash: fast genome and metagenome distance estimation using MinHash
2016 Standout
Machine learning-guided engineering of genetically encoded fluorescent calcium indicators
2024 StandoutNobel
Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq
2010 StandoutNobel
RazerS—fast read mapping with sensitivity control
2009
SeqAn An efficient, generic C++ library for sequence analysis
2008
Fast and sensitive protein alignment using DIAMOND
2014 Standout
Identification of a product specific β-amyrin synthase from Arabidopsis thaliana
2008
Fast and accurate de novo genome assembly from long uncorrected reads
2017 Standout
The Sequence Read Archive
2010 Standout
Sensitive protein alignments at tree-of-life scale using DIAMOND
2021 Standout
Accelerated Profile HMM Searches
2011 Standout
A Deterministic Finite Automaton for Faster Protein Hit Detection in BLAST
2006
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Speech Recognition Using Deep Neural Networks: A Systematic Review
2019
Perspective: Materials informatics and big data: Realization of the “fourth paradigm” of science in materials science
2016 Standout
Big Data: Survey, Technologies, Opportunities, and Challenges
2014 Standout
An overview of text-independent speaker recognition: From features to supervectors
2009
SOAP2: an improved ultrafast tool for short read alignment
2009 Standout
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
Fast and accurate long-read alignment with Burrows–Wheeler transform
2010 Standout
Standardization of pathways to adulthood? an analysis of Dutch cohorts born between 1850 and 1900
2010
DNA Sequence Compression Using Adaptive Particle Swarm Optimization-Based Memetic Algorithm
2011
Design and Analysis of FTZNN Applied to the Real-Time Solution of a Nonstationary Lyapunov Equation and Tracking Control of a Wheeled Mobile Manipulator
2017 Standout
A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera
2008
Knowledge Distillation-Based Representation Learning for Short-Utterance Spoken Language Identification
2020
SpEED: fast computation of sensitive spaced seeds
2011
Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand
2013 StandoutNobel
Complex Network Clustering by Multiobjective Discrete Particle Swarm Optimization Based on Decomposition
2013 Standout
ZOOM! Zillions of oligos mapped
2008
Second-generation PLINK: rising to the challenge of larger and richer datasets
2015 Standout
Big Data Analytics in Intelligent Transportation Systems: A Survey
2018 Standout
Knowledge Distillation: A Survey
2021 Standout
Combo: a whole genome comparative browser
2006
The World’s Technological Capacity to Store, Communicate, and Compute Information
2011 Science
Homo Ignorans
2016 Standout
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
2014 Standout
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
2013 Standout
Computational Approaches and Tools Used in Identification of Dispersed Repetitive DNA Sequences
2008
Quantum simulation
2014 Standout
A new measure of consensus with reciprocal preference relations: The correlation consensus degree
2016
High-throughput DNA sequence data compression
2013
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
2019 Standout
A survey on ensemble learning
2019 Standout
Compressed indexing and local alignment of DNA
2008
An artificial neural network approach to automatic speech processing
2014
Fast and accurate short read alignment with Burrows–Wheeler transform
2009 Standout
Finding the most unusual time series subsequence: algorithms and applications
2006
Data-intensive applications, challenges, techniques and technologies: A survey on Big Data
2014 Standout
Triterpene Biosynthesis in Plants
2014 Standout
A survey of deep neural network architectures and their applications
2016 Standout
A Survey of Deep Active Learning
2021 Standout
New Life for Old Ideas: The "Second Wave" of Sequence Analysis Bringing the "Course" Back Into the Life Course
2010 Standout
Anomaly detection
2009 Standout
Human genomes as email attachments
2008
A review of depression and suicide risk assessment using speech analysis
2015 Standout
Consensus reaching in social network group decision making: Research paradigms and challenges
2018 Standout
Hybrid Adaptive Classifier Ensemble
2014
Twelve years of SAMtools and BCFtools
2021 Standout
Is a Cambrian Explosion Coming for Robotics?
2015 Standout
TopHat: discovering splice junctions with RNA-Seq
2009 Standout
Designing patterns for profile HMM search
2007
A review of novelty detection
2014 Standout
Spaced seeds improvek-mer-based metagenomic classification
2015
Works of Bin Ma being referenced
DNACompress: fast and effective DNA sequence compression
2002
Greedy method for inferring tandem duplication history
2003
Distinguishing string selection problems
2003
Spoken Language Recognition: From Fundamentals to Practice
2013
Spoken Language Recognition Using Ensemble Classifiers
2007
On spaced seeds for similarity search
2003
A Vector Space Modeling Approach to Spoken Language Identification
2006
On the similarity metric and the distance metric
2009
PatternHunter II: highly sensitive and fast homology search.
2003
Sparse Classifier Fusion for Speaker Verification
2013
Seed optimization for i.i.d. similarities is no easier than optimal Golomb ruler design
2009