Citation Impact
Citing Papers
HTSeq—a Python framework to work with high-throughput sequencing data
2014 Standout
NanoPack: visualizing and processing long-read sequencing data
2018 Standout
Nmd3 is a structural mimic of eIF 5A, and activates the cp GTP ase Lsg1 during 60S ribosome biogenesis
2017 StandoutNobel
Computational Stabilization of a Non‐Heme Iron Enzyme Enables Efficient Evolution of New Function
2024 StandoutNobel
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Mega-scale experimental analysis of protein folding stability in biology and design
2023 Nature
Solution structure of Gaussia Luciferase with five disulfide bonds and identification of a putative coelenterazine binding cavity by heteronuclear NMR
2020
Hydrophobic mismatch drives self-organization of designer proteins into synthetic membranes
2024 StandoutNobel
PLIP: fully automated protein–ligand interaction profiler
2015 Standout
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
2015 Standout
Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics
2018 StandoutNobel
MDAnalysis: A toolkit for the analysis of molecular dynamics simulations
2011 Standout
Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation
2011 StandoutNobel
De novo design of luciferases using deep learning
2023 StandoutNatureNobel
MITOS: Improved de novo metazoan mitochondrial genome annotation
2012 Standout
CREDO: A Protein–Ligand Interaction Database for Drug Discovery
2009
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
2016 Standout
Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site
2017 StandoutNobel
Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
2011 StandoutNobel
KoBaMIN: a knowledge-based minimization web server for protein structure refinement
2012 StandoutNobel
An introduction to simulated evolutionary optimization
1994
The evolutionary language game: An orthogonal approach
2005
Genetic evolution of the topology and weight distribution of neural networks
1994
Deep learning in neural networks: An overview
2014 Standout
The role of artificial intelligence in achieving the Sustainable Development Goals
2020 Standout
Ant system: optimization by a colony of cooperating agents
1996 Standout
Modeling nucleic acids
2012 StandoutNobel
Massively parallel kinetic profiling of natural and engineered CRISPR nucleases
2020 StandoutNobel
The Whale Optimization Algorithm
2016 Standout
Evolutionary computation: comments on the history and current state
1997
Variable neighborhood search: Principles and applications
2001 Standout
A General Tool for Engineering the NAD/NADP Cofactor Preference of Oxidoreductases
2016 StandoutNobel
Assessment of protein side-chain conformation prediction methods in different residue environments
2014
BioShell—a package of tools for structural biology computations
2006
Learning from Imbalanced Data
2009 Standout
Differential Evolution: A Survey of the State-of-the-Art
2010 Standout
Metaheuristics: A bibliography
1996
Fluorine and Fluorinated Motifs in the Design and Application of Bioisosteres for Drug Design
2018 Standout
A review on simulation-based optimization methods applied to building performance analysis
2013 Standout
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies
2014
A review on machinery diagnostics and prognostics implementing condition-based maintenance
2005 Standout
Statistical physics of social dynamics
2009 Standout
Utility library for structural bioinformatics
2008
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Parallelism and evolutionary algorithms
2002
The Artificial Life Roots of Artificial Intelligence
1993
A comprehensive review of big data analytics throughout product lifecycle to support sustainable smart manufacturing: A framework, challenges and future research directions
2018 Standout
Data mining in manufacturing: a review based on the kind of knowledge
2008
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations
2016
Searching for Diverse, Cooperative Populations with Genetic Algorithms
1993
Ant colony system: a cooperative learning approach to the traveling salesman problem
1997 Standout
Biopython: freely available Python tools for computational molecular biology and bioinformatics
2009 Standout
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks
2023 StandoutNobel
ProDy: Protein Dynamics Inferred from Theory and Experiments
2011
Identifying the signs of fraudulent accounts using data mining techniques
2012
Moth-flame optimization algorithm: A novel nature-inspired heuristic paradigm
2015 Standout
Harris hawks optimization: Algorithm and applications
2019 Standout
Grey Wolf Optimizer
2014 Standout
Intelligent financial fraud detection: A comprehensive review
2015
A new rank based version of the Ant System. A computational study.
1997
Minority report in fraud detection
2004
The future of employment: How susceptible are jobs to computerisation?
2016 Standout
Rational Design of Orthogonal Multipolar Interactions with Fluorine in Protein–Ligand Complexes
2015
Structural Basis Unifying Diverse GTP Hydrolysis Mechanisms
2013
Genetic algorithms and their applications
1996
Socially intelligent robots: dimensions of human–robot interaction
2007 Standout
Anomaly detection
2009 Standout
Multiobjective evolutionary algorithms: a comparative case study and the strength Pareto approach
1999 Standout
Design of Space Trusses Using Ant Colony Optimization
2004 Standout
An improved multi-objective ant colony algorithm for building life cycle energy consumption optimisation
2012
The Exploration/Exploitation Tradeoff in Dynamic Cellular Genetic Algorithms
2005
A genetic algorithm tutorial
1994 Standout
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
2013 Standout
A review of computational optimisation methods applied to sustainable building design
2013 Standout
GSA: A Gravitational Search Algorithm
2009 Standout
Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations
2019 StandoutNobel
Ant Direction Hybrid Differential Evolution for Solving Large Capacitor Placement Problems
2004
Works of Bernard Manderick being referenced
An Investigation of Some Properties of an Ant Algorithm
1992
Towards a relation between learning agents and evolutionary dynamics
2002
Fine-Grained Parallel Genetic Algorithms
1989
Parallel Problem Solving from Nature, 2: Proceedings of the Second Conference on Parallel Problem Solving from Nature, Brussels, Belgium, 28-30 September, 1992
1992
A Massively Parallel Genetic Algorithm: Implementation and First Analysis.
1991
PDB file parser and structure class implemented in Python
2003
Credit Card Fraud Detection Using Bayesian and Neural Networks
2002
A Decision Theoretic Approach
2006