Citation Impact
Citing Papers
MEGA11: Molecular Evolutionary Genetics Analysis Version 11
2021 Standout
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Accelerating extinction risk from climate change
2015 StandoutScience
Resolution of ray-finned fish phylogeny and timing of diversification
2012 Standout
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
The contribution of edaphic heterogeneity to the evolution and diversity of Burseraceae trees in the western Amazon.
2005
Global view of the functional molecular organization of the avian cerebrum: Mirror images and functional columns
2013
The Ensembl Variant Effect Predictor
2016 Standout
Rapid progress on the vertebrate tree of life
2010
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
2020 Standout
Molecular evolution of genes in avian genomes
2010
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
2013 Standout
Repbase Update, a database of repetitive elements in eukaryotic genomes
2015 Standout
Genome sequence-based species delimitation with confidence intervals and improved distance functions
2013 Standout
What are the consequences of combining nuclear and mitochondrial data for phylogenetic analysis? Lessons from Plethodonsalamanders and 13 other vertebrate clades
2011
En route to a genome-based classification of Archaea and Bacteria?
2010
The biogeography of mitochondrial and nuclear discordance in animals
2012 Standout
Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods
2016
The global diversity of birds in space and time
2012 StandoutNature
Identifying localized biases in large datasets: A case study using the avian tree of life
2013
To name or not to name: Criteria to promote economy of change in Linnaean classification schemes
2013
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
2016 Standout
Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation
2011
Primer3—new capabilities and interfaces
2012 Standout
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
2012 Standout
Cellular Scaling Rules for the Brains of Marsupials: Not as “Primitive” as Expected
2017 Standout
EVOLUTION INTO AND OUT OF THE ANDES: A BAYESIAN ANALYSIS OF HISTORICAL DIVERSIFICATION INTHAMNOPHILUSANTSHRIKES
2007
AMNIOTE PHYLOGENY AND THE IMPORTANCE OF FOSSILS
1988 Standout
The integrative future of taxonomy
2010 Standout
A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
2013
Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)
2015
Morphology to the rescue: molecular data and the signal of morphological characters in combined phylogenetic analyses-a case study from mysmenid spiders (Araneae, Mysmenidae), with comments on the evolution of web architecture
2010
Biogeographical regionalisation of the Neotropical region
2014 Standout
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
2018 Standout
Congruence between nuclear and mitochondrial DNA: Combination of multiple nuclear introns resolves a well-supported phylogeny of New World orioles (Icterus)
2010
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
Do species’ traits predict recent shifts at expanding range edges?
2011
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
2017 Standout
Homology and evolution of the deep dorsal thigh musculature in birds and other reptilia
1986
Computational challenges in the analysis of ancient DNA
2010 StandoutNobel
The merging of community ecology and phylogenetic biology
2009 Standout
Fine-Scale Phylogenetic Discordance across the House Mouse Genome
2009
Evolutionary history of Coleoptera revealed by extensive sampling of genes and species
2018 Standout
Selecting optimal partitioning schemes for phylogenomic datasets
2014
Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes
2014
ModelFinder: fast model selection for accurate phylogenetic estimates
2017 Standout
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
2018 Standout
SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
2010 Standout
Cladistic biogeography of theN eotropical region: identifying the main events in the diversification of the terrestrial biota
2013
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
2012
Tracing the impact of the Andean uplift on Neotropical plant evolution
2009 Standout
THE CONTRIBUTION OF EDAPHIC HETEROGENEIYT TO THE EVOLUTION AND DIVERSITY OF BURSERACEAR TREES IN THE WESTERN AMAZON
2005
The age of the crown group of passerine birds and its evolutionary significance – molecular calibrations versus the fossil record
2013
A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera
2012 Standout
Climate Change 2022 – Impacts, Adaptation and Vulnerability
2023 Standout
Systematics and biogeography of Polietina Schnabl & Dziedzicki (Diptera, Muscidae): Neotropical area relationships and Amazonia as a composite area
2007
Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity
2010 StandoutScience
Predicting the past distribution of species climatic niches
2009
BIOGEOGRAPHIC AREAS AND TRANSITION ZONES OF LATIN AMERICA AND THE CARIBBEAN ISLANDS BASED ON PANBIOGEOGRAPHIC AND CLADISTIC ANALYSES OF THE ENTOMOFAUNA
2005 Standout
Evolution of terrestrial birds in three continents: biogeography and parallel radiations
2011
Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”
2009
A synthesis of two decades of research documenting the effects of noise on wildlife
2015 Standout
THE CONTRIBUTION OF EDAPHIC HETEROGENEITY TO THE EVOLUTION AND DIVERSITY OF BURSERACEAE TREES IN THE WESTERN AMAZON
2005
The Genome 10K Project: A Way Forward
2015
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species
2009
Metaves, Mirandornithes, Strisores and other novelties - a critical review of the higher-level phylogeny of neornithine birds
2010
Cryptic genetic diversity in “widespread” Southeast Asian bird species suggests that Philippine avian endemism is gravely underestimated
2010
A new time tree reveals Earth history’s imprint on the evolution of modern birds
2015
Artificial hummingbird algorithm: A new bio-inspired optimizer with its engineering applications
2021 Standout
Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics
2017
Phylogeny of the Coleoptera Based on Morphological Characters of Adults and Larvae
2011 Standout
Combining Phylogenomics and Fossils in Higher-Level Squamate Reptile Phylogeny: Molecular Data Change the Placement of Fossil Taxa
2010
Behavioural responses of wildlife to urban environments
2012 Standout
A quantitative review of MHC ‐based mating preference: the role of diversity and dissimilarity
2014
Hummingbirds have a greatly enlarged hippocampal formation
2012
Rapid Range Shifts of Species Associated with High Levels of Climate Warming
2011 StandoutScience
Patterns of Amazonian area relationships based on raw distributions of papilionid butterflies (Lepidoptera: Papilioninae)
2004
Birds have primate-like numbers of neurons in the forebrain
2016
DIVERGENT TIMING AND PATTERNS OF SPECIES ACCUMULATION IN LOWLAND AND HIGHLAND NEOTROPICAL BIRDS
2006
Statistical binning enables an accurate coalescent-based estimation of the avian tree
2014 Science
Update on Tick-Borne Rickettsioses around the World: a Geographic Approach
2013 Standout
ASTRAL: genome-scale coalescent-based species tree estimation
2014 Standout
An Update of Wallace’s Zoogeographic Regions of the World
2012 Science
Review of plant biogeographic studies in Brazil
2009
The Radical-Pair Mechanism of Magnetoreception
2016 Standout
Historical relationships among areas of endemism in the tropical South America using Brooks Parsimony Analysis (BPA)
2009
Which birds adjust the frequency of vocalizations in urban noise?
2010
Works of Ben D. Marks being referenced
Historical relationships among Neotropical lowland forest areas of endemism as determined by mitochondrial DNA sequence variation within the Wedge-billed Woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus)
2002
Homoplastic microinversions and the avian tree of life
2011
Are lowland rainforests really evolutionary museums? Phylogeography of the green hylia (Hylia prasina) in the Afrotropics
2009
Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: A case of remarkable genetic divergence in a “species”
2006
Molecular phylogenetics of the bee-eaters (Aves: Meropidae) based on nuclear and mitochondrial DNA sequence data
2007
PHYLOGENETIC RELATIONSHIPS OF THE MADAGASCAR PYGMY KINGFISHER (ISPIDINA MADAGASCARIENSIS)
2005
Are Transposable Element Insertions Homoplasy Free?: An Examination Using the Avian Tree of Life
2011
Phylogenomic evidence for multiple losses of flight in ratite birds
2008
Feeding behavior, toe count, and the phylogenetic relationships among alcedinine kingfishers (Alcedininae)
2007
A Phylogenomic Study of Birds Reveals Their Evolutionary History
2008 StandoutScience