Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Structures of the CRISPR genome integration complex
2017 StandoutScienceNobel
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
2015 Science
An integrated map of genetic variation from 1,092 human genomes
2012 StandoutNature
A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
2012
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
RNA-seq Profiling of Small Numbers of Drosophila Neurons
2014 StandoutNobel
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
2012
Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis
2016 StandoutNobel
Resolving the complexity of the human genome using single-molecule sequencing
2014 Nature
Ultrasensitive deletion detection links mitochondrial DNA replication, disease, and aging
2020
The genome of the offspring of a Neanderthal mother and a Denisovan father
2018 StandoutNatureNobel
Single-cell chromatin accessibility reveals principles of regulatory variation
2015 Nature
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
Hallmarks of aging: An expanding universe
2023 Standout
Understanding the tumor immune microenvironment (TIME) for effective therapy
2018 Standout
Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres
2014
Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
2013
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
A mitochondrial genome sequence of a hominin from Sima de los Huesos
2013 StandoutNatureNobel
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
2012
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
Genome sequencing and population genomics in non-model organisms
2013
A general framework for estimating the relative pathogenicity of human genetic variants
2014 Standout
Haplotype-resolved genome sequencing of a Gujarati Indian individual
2010
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
Evolution of a designed protein assembly encapsulating its own RNA genome
2017 StandoutNatureNobel
Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
2012
Chromatin states define tumour-specific T cell dysfunction and reprogramming
2017 Nature
Sequencing thousands of single-cell genomes with combinatorial indexing
2017
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples
2014 StandoutNobel
Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing
2014
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
2014
Liquid biopsies come of age: towards implementation of circulating tumour DNA
2017 Standout
Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment
2016 StandoutNobel
Exome sequencing as a tool for Mendelian disease gene discovery
2011
An early modern human from Romania with a recent Neanderthal ancestor
2015 StandoutNatureNobel
Full-length RNA-seq from single cells using Smart-seq2
2014 Standout
Distinct Foxp3 enhancer elements coordinate development, maintenance, and function of regulatory T cells
2021 StandoutNobel
Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
2017 Standout
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins
2016 StandoutNatureNobel
Highly scalable generation of DNA methylation profiles in single cells
2018
Assembly of long, error-prone reads using repeat graphs
2019 Standout
Signatures of Archaic Adaptive Introgression in Present-Day Human Populations
2016
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
2014
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
2013 Standout
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
2013 Standout
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
2015 Standout
Inference of human population history from individual whole-genome sequences
2011 StandoutNature
ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
2015
A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility
2018
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
2017 Standout
Regulatory T Cell-Specific Epigenomic Region Variants Are a Key Determinant of Susceptibility to Common Autoimmune Diseases
2020 StandoutNobel
Whole genome sequencing for quantifying germline mutation frequency in humans and model species: Cautious optimism
2011
Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment
2014 Standout
Comprehensive Integration of Single-Cell Data
2019 Standout
Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation
2018
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing
2016 StandoutNobel
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery
2018
Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response
2018 Standout
CADD: predicting the deleteriousness of variants throughout the human genome
2018 Standout
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
The Genome 10K Project: A Way Forward
2015
Fundamental Mechanisms of Immune Checkpoint Blockade Therapy
2018 StandoutNobel
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
2018 StandoutScienceNobel
A fourth Denisovan individual
2017 StandoutNobel
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
2015 StandoutNobel
Cancer Genome Landscapes
2013 StandoutScience
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
2013 StandoutNobel
ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide
2015 Standout
PhyloSift: phylogenetic analysis of genomes and metagenomes
2014
The makers of the Protoaurignacian and implications for Neandertal extinction
2015 StandoutScienceNobel
AlleleSeq: analysis of allele‐specific expression and binding in a network framework
2011
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition
2017 StandoutNobel
Works of Asan being referenced
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
2010
Wide distribution and altitude correlation of an archaic high-altitude-adaptive EPAS1 haplotype in the Himalayas
2016
Comprehensive comparison of three commercial human whole-exome capture platforms
2011
Reference-assisted chromosome assembly
2013
Demographic History and Genetic Adaptation in the Himalayan Region Inferred from Genome-Wide SNP Genotypes of 49 Populations
2018