Citation Impact
Citing Papers
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
A noninflammatory mRNA vaccine for treatment of experimental autoimmune encephalomyelitis
2021 StandoutScienceNobel
High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding
2017 StandoutNobel
NOTCH Signaling Is Required for Formation and Self-Renewal of Tumor-Initiating Cells and for Repression of Secretory Cell Differentiation in Colon Cancer
2010 StandoutNobel
Dropout: a simple way to prevent neural networks from overfitting
2014 StandoutNobel
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
FMRP targets distinct mRNA sequence elements to regulate protein expression
2012 Nature
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism
2014
Differential expression analysis for sequence count data
2010 Standout
Estimating accuracy of RNA-Seq and microarrays with proteomics
2009
Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m 6 A-demethylation of NANOG mRNA
2016 StandoutNobel
irCLIP platform for efficient characterization of protein–RNA interactions
2016
PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins
2010
Postnatal leptin surge and regulation of circadian rhythm of leptin by feeding. Implications for energy homeostasis and neuroendocrine function.
1998
Differential analysis of gene regulation at transcript resolution with RNA-seq
2012 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
The haplo-spliceo-transcriptome: common variations in alternative splicing in the human population
2007
Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
2014
Alternative isoform regulation in human tissue transcriptomes
2008 StandoutNature
Transcriptome-wide Analysis of Regulatory Interactions of the RNA-Binding Protein HuR
2011
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
Deciphering the splicing code
2010 Nature
The genomic landscape of Neanderthal ancestry in present-day humans
2014 StandoutNatureNobel
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
2013
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
The Centrality of RNA
2009
GSVA: gene set variation analysis for microarray and RNA-Seq data
2013 Standout
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
2011 Standout
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Viral crosslinking and solid-phase purification enables discovery of ribonucleoprotein complexes on incoming RNA virus genomes
2020
Systems biology of innate immunity
2008
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
2011
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
2011 Standout
FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
2011 Standout
RNA-binding proteins in neurodegeneration: Seq and you shall receive
2015
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps
2009 Nature
Central nervous system control of food intake
2000 StandoutNature
Natural RNA circles function as efficient microRNA sponges
2013 StandoutNature
RNA and Disease
2009
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
Enterochromaffin Cells Are Gut Chemosensors that Couple to Sensory Neural Pathways
2017 StandoutNobel
An alternative mode of microRNA target recognition
2012
LIN28A Is a Suppressor of ER-Associated Translation in Embryonic Stem Cells
2012
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
2011
Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain
2012
Protein-RNA networks revealed through covalent RNA marks
2015
Understanding mechanisms underlying human gene expression variation with RNA sequencing
2010 Nature
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
2010
TDP-43 high throughput screening analyses in neurodegeneration: Advantages and pitfalls
2013
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
2012 Standout
Protein–RNA interactions: new genomic technologies and perspectives
2012
Pre-mRNA splicing: where and when in the nucleus
2011
Genome-wide Analysis of Alternative Pre-mRNA Splicing and RNA-Binding Specificities of the Drosophila hnRNP A/B Family Members
2009
HITS‐CLIP: panoramic views of protein–RNA regulation in living cells
2010
Stem cell transcriptome profiling via massive-scale mRNA sequencing
2008
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
Functional and Evolutionary Insights into Human Brain Development through Global Transcriptome Analysis
2009
DNA-PKcs has KU-dependent function in rRNA processing and haematopoiesis
2020 StandoutNatureNobel
The Drosophila takeout Gene Is a Novel Molecular Link between Circadian Rhythms and Feeding Behavior
2000 StandoutNobel
CLIP: Construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo
2009
Methods of integrating data to uncover genotype–phenotype interactions
2015
Genome-wide analysis of transcript isoform variation in humans
2008
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes
2014
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression
2013
RNA processing and its regulation: global insights into biological networks
2009
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
2012
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Genome Regulation by Long Noncoding RNAs
2012 Standout
RNA–protein analysis using a conditional CRISPR nuclease
2013 StandoutNobel
Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions
2012
Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses
2011 StandoutNobel
Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context
2011
Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
2011 StandoutNobel
A powerful and flexible approach to the analysis of RNA sequence count data
2011
Transcriptional neoteny in the human brain
2009 StandoutNobel
Cancer-associated regulation of alternative splicing
2009
Identification of DNA cleavage- and recombination-specific hnRNP cofactors for activation-induced cytidine deaminase
2015 StandoutNobel
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
Integrative Modeling Defines the Nova Splicing-Regulatory Network and Its Combinatorial Controls
2010 Science
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
2012
Rapid metabolic evolution in human prefrontal cortex
2011 StandoutNobel
RNA Regulation in Neurologic Disease and Cancer
2010
Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal
2012 StandoutNobel
Expression of Leptin Receptor Isoforms in Rat Brain Microvessels
1998
Chemical Glycoproteomics
2016 StandoutNobel
Works of Anthony Schweitzer being referenced
Discovery of tissue-specific exons using comprehensive human exon microarrays
2007
A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing
2007
Heritability of alternative splicing in the human genome
2007
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
2008 Nature
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
2010
Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
2006
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain
2011
Leptin Stimulates Fetal and Adult Erythroid and Myeloid Development
1997
A genome-wide approach to identify genetic variants that contribute to etoposide-induced cytotoxicity
2007