Citation Impact
Citing Papers
FUNC: a package for detecting significant associations between gene sets and ontological annotations
2007 StandoutNobel
WGCNA: an R package for weighted correlation network analysis
2008 Standout
Gene ontology analysis for RNA-seq: accounting for selection bias
2010 Standout
How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
2007
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
In silico prediction of protein-protein interactions in human macrophages
2014 Standout
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Network‐based prediction of protein function
2007
From stress to inflammation and major depressive disorder: A social signal transduction theory of depression.
2014 Standout
Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data
2006
Cell type-selective secretome profiling in vivo
2020 StandoutNobel
Pathogenesis of IBS: role of inflammation, immunity and neuroimmune interactions
2010
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides
2017 StandoutNobel
Bowel Disorders
2016 Standout
agriGO: a GO analysis toolkit for the agricultural community
2010 Standout
Mucosal inflammation as a potential etiological factor in irritable bowel syndrome: a systematic review
2011
Diagnosis, management, and prognosis of preschool wheeze
2014
Identification of Common Biological Pathways and Drug Targets Across Multiple Respiratory Viruses Based on Human Host Gene Expression Analysis
2012
N6-methyladenosine Modulates Messenger RNA Translation Efficiency
2015 Standout
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
The Molecular Signatures Database Hallmark Gene Set Collection
2015 Standout
GSVA: gene set variation analysis for microarray and RNA-Seq data
2013 Standout
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
2011 Standout
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
2014 Standout
Efficacy of Prebiotics, Probiotics, and Synbiotics in Irritable Bowel Syndrome and Chronic Idiopathic Constipation: Systematic Review and Meta-analysis
2014
The interplay between the intestinal microbiota and the brain
2012 Standout
Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis
2006
Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
2010 Standout
Probiotics in functional gastrointestinal disorders: what are the facts?
2008
Asthma
2017 Standout
Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children
2016 Standout
Mendelian randomization: genetic anchors for causal inference in epidemiological studies
2014 Standout
Exploring the genetic basis of chronic periodontitis: a genome-wide association study
2013
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
2013 Standout
Causal inference of gene regulation with subnetwork assembly from genetical genomics data
2013
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
2011 Standout
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
Geometric Interpretation of Gene Coexpression Network Analysis
2008
A categorization approach to automated ontological function annotation
2006
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
Drug repurposing: progress, challenges and recommendations
2018 Standout
Revealing the human mucinome
2022 StandoutNobel
eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications
2007
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
The pangenome of an agronomically important crop plant Brassica oleracea
2016 Standout
Periodontitis: from microbial immune subversion to systemic inflammation
2014 Standout
Toward the dynamic interactome: it's about time
2010
The anti-inflammatory effects of exercise: mechanisms and implications for the prevention and treatment of disease
2011 Standout
Asthma phenotypes: the evolution from clinical to molecular approaches
2012 Standout
Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour
2012 Standout
Semantic Similarity in Biomedical Ontologies
2009
Interferon regulatory factor 7 is a major hub connecting interferon-mediated responses in virus-induced asthma exacerbations in vivo
2011
Using GOstats to test gene lists for GO term association
2006 Standout
Irritable Bowel Syndrome
2015 Standout
Identifying functional modules in protein–protein interaction networks: an integrated exact approach
2008
Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier
2019 StandoutNobel
The ABCs of Rhinoviruses, Wheezing, and Asthma
2010
Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans
2014 StandoutNobel
Community detection in graphs
2009 Standout
Review article: associations between immune activation, intestinal permeability and the irritable bowel syndrome
2012
A role for the gut microbiota in IBS
2014
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
2007 Standout
Human T lymphocyte migration towards the supernatants of human rhinovirus infected airway epithelial cells: influence of exercise and carbohydrate intake.
2009
Gastrointestinal microbiota in irritable bowel syndrome: present state and perspectives
2010
Temporal networks
2012 Standout
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
2006 Standout
Molecular signatures database (MSigDB) 3.0
2011 Standout
Do interactions between stress and immune responses lead to symptom exacerbations in irritable bowel syndrome?
2011
Contextual analysis of RNAi-based functional screens using interaction networks
2011
Resolvin E1 Reverses Experimental Periodontitis and Dysbiosis
2016
The oral microbiota: dynamic communities and host interactions
2018 Standout
Nonreciprocal homeostatic compensation in Drosophila potassium channel mutants
2017 StandoutNobel
Transcriptional modulation of the developing immune system by early life social adversity
2012
Functional Gastrointestinal Disorders: History, Pathophysiology, Clinical Features, and Rome IV
2016 Standout
DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)
2022 Standout
Works of Andy Fulmer being referenced
Gene Expression Profiles during In Vivo Human Rhinovirus Infection
2008
Gingival Transcriptome Patterns During Induction and Resolution of Experimental Gingivitis in Humans
2009
The Gene Ontology Categorizer
2004
Mucosal cytokine imbalance in irritable bowel syndrome
2008
Differential network expression during drug and stress response
2005
PubMed Assistant: a biologist-friendly interface for enhanced PubMed search
2005