Citation Impact
Citing Papers
Three-dimensional intact-tissue sequencing of single-cell transcriptional states
2018 Science
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis
2019 Standout
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
2016
Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles
2018 Science
A noninflammatory mRNA vaccine for treatment of experimental autoimmune encephalomyelitis
2021 StandoutScienceNobel
A sex-biased imbalance between Tfr, Tph, and atypical B cells determines antibody responses in COVID-19 patients
2023 StandoutNobel
Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo
2018 Science
Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region
2018 Science
DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
2019 Standout
Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model
2019
Splatter: simulation of single-cell RNA sequencing data
2017
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data
2017
Inference and analysis of cell-cell communication using CellChat
2021 Standout
Lineage dynamics of murine pancreatic development at single-cell resolution
2018
A general and flexible method for signal extraction from single-cell RNA-seq data
2018
The promise and challenge of therapeutic genome editing
2020 StandoutNatureNobel
SCANPY: large-scale single-cell gene expression data analysis
2018 Standout
Challenges and emerging directions in single-cell analysis
2017
Determining cell type abundance and expression from bulk tissues with digital cytometry
2019 Standout
Coronavirus biology and replication: implications for SARS-CoV-2
2020 Standout
A discriminative learning approach to differential expression analysis for single-cell RNA-seq
2019
Molecular Architecture of the Mouse Nervous System
2018 Standout
Precise Gene Editing Preserves Hematopoietic Stem Cell Function following Transient p53-Mediated DNA Damage Response
2019
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
Fast, sensitive and accurate integration of single-cell data with Harmony
2019 Standout
Post-transcriptional gene regulation by mRNA modifications
2016 Standout
Hallmarks of aging: An expanding universe
2023 Standout
Allergic inflammatory memory in human respiratory epithelial progenitor cells
2018 Nature
Single-cell mRNA quantification and differential analysis with Census
2017
Revealing the vectors of cellular identity with single-cell genomics
2016
SCENIC: single-cell regulatory network inference and clustering
2017 Standout
Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging
2020
SCnorm: robust normalization of single-cell RNA-seq data
2017
Diverse partial reprogramming strategies restore youthful gene expression and transiently suppress cell identity
2022
Exploiting single-cell expression to characterize co-expression replicability
2016
Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data
2018
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
Diffusion pseudotime robustly reconstructs lineage branching
2016
Single-cell technologies for monitoring immune systems
2014
Cellular senescence in ageing: from mechanisms to therapeutic opportunities
2020 Standout
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
2019 Standout
Bayesian approach to single-cell differential expression analysis
2014
Deep generative modeling for single-cell transcriptomics
2018
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
2020 Standout
A test metric for assessing single-cell RNA-seq batch correction
2018
f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq
2017
Single-cell analysis reveals a stem-cell program in human metastatic breast cancer cells
2015 Nature
Evaluating Genome-Wide Association Study-Identified Breast Cancer Risk Variants in African-American Women
2013
SAVER: gene expression recovery for single-cell RNA sequencing
2018
A molecular cell atlas of the human lung from single-cell RNA sequencing
2020 Nature
Diversity amongst trigeminal neurons revealed by high throughput single cell sequencing
2017
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
2019 Standout
Emerging Biological Principles of Metastasis
2017 Standout
Dictionary learning for integrative, multimodal and scalable single-cell analysis
2023 Standout
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
2015 Standout
Spatial reconstruction of single-cell gene expression data
2015 Standout
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
2020 Standout
Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
2017 Standout
Normalizing single-cell RNA sequencing data: challenges and opportunities
2017
Dimensionality reduction for visualizing single-cell data using UMAP
2018 Standout
The biogenesis, biology and characterization of circular RNAs
2019 Standout
Simultaneous lineage tracing and cell-type identification using CRISPR–Cas9-induced genetic scars
2018
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
2015 Standout
Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade
2017 StandoutNobel
Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients
2020
Massively parallel single-nucleus RNA-seq with DroNc-seq
2017
Metastatic colonization by circulating tumour cells
2016 StandoutNature
Defining trained immunity and its role in health and disease
2020 Standout
MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices
2019
VEGF in Signaling and Disease: Beyond Discovery and Development
2019 Standout
Comprehensive Integration of Single-Cell Data
2019 Standout
Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing
2014 Standout
Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
2016
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
Imbalance of Regulatory and Cytotoxic SARS-CoV-2-Reactive CD4+ T Cells in COVID-19
2020
Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors
2017
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Reversed graph embedding resolves complex single-cell trajectories
2017 Standout
Missing data and technical variability in single-cell RNA-sequencing experiments
2017
Understanding development and stem cells using single cell-based analyses of gene expression
2017
TIMER2.0 for analysis of tumor-infiltrating immune cells
2020 Standout
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19
2020
Molecular transitions in early progenitors during human cord blood hematopoiesis
2018
Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data
2017
Single cells make big data: New challenges and opportunities in transcriptomics
2017
The mechanosensitive ion channel Piezo2 mediates sensitivity to mechanical pain in mice
2018 StandoutNobel
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
Comparison of Computational Methods for Imputing Single-Cell RNA-Sequencing Data
2018
Cellular uptake of nanoparticles: journey inside the cell
2017 Standout
Emerging Droplet Microfluidics
2017 Standout
Diffusion maps for high-dimensional single-cell analysis of differentiation data
2015
Works of Andrew McDavid being referenced
Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells
2014
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
2015 Standout
Highly multiplexed quantitation of gene expression on single cells
2013
Examination of ancestral informative markers and self-reported race with tumor characteristics of breast cancer among black and white women
2012
Mixture models for single-cell assays with applications to vaccine studies
2013
Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments
2012