Standout Papers
Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging
2014
VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data
2020 StandoutNobel
Accelerated evolution of oligodendrocytes in the human brain
2019
Genetic Influences on Brain Gene Expression in Rats Selected for Tameness and Aggression
2014 StandoutNobel
JKCS 041: a colour-detected galaxy cluster at $z_{\mathrm{phot}}$ ~ 1.9 with deep potential well as confirmed by X-ray data
2009
Methylation signatures in peripheral blood are associated with marked age acceleration and disease progression in patients with primary sclerosing cholangitis
2019
Transcriptomic portrait of human Mesenchymal Stromal/Stem cells isolated from bone marrow and placenta
2014
High‐throughput identification of RNA nuclear enrichment sequences
2018
Depression
2018 Standout
The landscape of human tissue and cell type specific expression and co-regulation of senescence genes
2022
Secondhand smoke in combination with ambient air pollution exposure is associated with increasedx CpG methylation and decreased expression of IFN-γ in T effector cells and Foxp3 in T regulatory cells in children
2012
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
2018
Hippocampal transcriptome analysis following maternal separation implicates altered RNA processing in a mouse model of fetal alcohol spectrum disorder
2020
Epiviz: interactive visual analytics for functional genomics data
2014
Genetic effects on gene expression across human tissues
2017 StandoutNature
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
Fast, sensitive and accurate integration of single-cell data with Harmony
2019 Standout
Rheumatoid arthritis
2016 Standout
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
Pancreatic cancer
2020 Standout
Landscape of X chromosome inactivation across human tissues
2017 Nature
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
2014
Multi-omics approaches to disease
2017
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
Hallmarks of aging: An expanding universe
2023 Standout
A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks
2015
Pre-analytic Considerations for Mass Spectrometry-Based Untargeted Metabolomics Data
2019
The biology and function of fibroblasts in cancer
2016 Standout
Pancreatic cancer
2016 Standout
The changing landscape of atherosclerosis
2021 StandoutNature
Hacking the Cancer Genome: Profiling Therapeutically Actionable Long Non-coding RNAs Using CRISPR-Cas9 Screening
2019
DNA methylation signatures reflect aging in patients with nonalcoholic steatohepatitis
2018
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
2017 StandoutNature
Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer
2013
The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary
2016 Standout
Salmon provides fast and bias-aware quantification of transcript expression
2017 Standout
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans
2015
Pancreatic Adenocarcinoma
2014 Standout
Alzheimer Disease: An Update on Pathobiology and Treatment Strategies
2019 Standout
Origins of human disease: the chrono-epigenetic perspective
2021
A Novel Ultrasensitive In Situ Hybridization Approach to Detect Short Sequences and Splice Variants with Cellular Resolution
2017
Presence of Somatic Mutations in Most Early-Stage Pancreatic Intraepithelial Neoplasia
2012
Gut microbiome alterations in Alzheimer’s disease
2017 Standout
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
A test metric for assessing single-cell RNA-seq batch correction
2018
Biological age is increased by stress and restored upon recovery
2023
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
A benchmark for RNA-seq quantification pipelines
2016
svaseq: removing batch effects and other unwanted noise from sequencing data
2014
Translating Neurogenomics Into New Medicines
2015
Epigenetics of Stress-Related Psychiatric Disorders and Gene × Environment Interactions
2015
Stratification of Pancreatic Ductal Adenocarcinomas Based on Tumor and Microenvironment Features
2018
Seeing through VEGF: innate and adaptive immunity in pathological angiogenesis in the eye
2014
Towards a complete map of the human long non-coding RNA transcriptome
2018
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Applications of CRISPR technologies in research and beyond
2016 StandoutNobel
Modulation of EZH2 expression in T cells improves efficacy of anti–CTLA-4 therapy
2018 StandoutNobel
Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation
2016
Making sense of the ageing methylome
2022
The biogenesis, biology and characterization of circular RNAs
2019 Standout
DEBrowser: interactive differential expression analysis and visualization tool for count data
2019
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity
2024 StandoutNobel
Outdoor air pollution and asthma
2014 Standout
CRISPR-Based Technologies for the Manipulation of Eukaryotic Genomes
2016 Standout
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
2016 Standout
Field-resolved infrared spectroscopy of biological systems
2020 StandoutNatureNobel
Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
2016
VEGF in Signaling and Disease: Beyond Discovery and Development
2019 Standout
Gliomatosis cerebri in children shares molecular characteristics with other pediatric gliomas
2016
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis
2013
Tumor-infiltrating regulatory T cells as targets of cancer immunotherapy
2023 StandoutNobel
Computational Metabolomics: A Framework for the Million Metabolome
2016
A Fibrosis‐Independent Hepatic Transcriptomic Signature Identifies Drivers of Disease Progression in Primary Sclerosing Cholangitis
2020 StandoutNobel
Single Cell RNA Sequencing in Atherosclerosis Research
2020
Tirzepatide Once Weekly for the Treatment of Obesity
2022 Standout
Hospitalization and Mortality among Black Patients and White Patients with Covid-19
2020 Standout
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Prediction of genome-wide DNA methylation in repetitive elements
2017
Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan
2014 StandoutScienceNobel
Genome-wide DNA methylation analysis identifies hypomethylated genes regulated by FOXP3 in human regulatory T cells
2013
Evidence for grain growth in molecular clouds: A Bayesian examination of the extinction law in Perseus
2012
How neuroinflammation contributes to neurodegeneration
2016 StandoutScience
HOW TO DISTINGUISH BETWEEN CLOUDY MINI-NEPTUNES AND WATER/VOLATILE-DOMINATED SUPER-EARTHS
2013
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
2012
AN X-RAY-SELECTED GALAXY CLUSTER IN THE LOCKMAN HOLE AT REDSHIFT 1.753
2010 StandoutNobel
Obesity Pathogenesis: An Endocrine Society Scientific Statement
2017
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
2018 Standout
Epigenetic Reprogramming in Naive CD4+ T Cells Favoring T Cell Activation and Non‐Th1 Effector T Cell Immune Response as an Early Event in Lupus Flares
2016
MultiQC: summarize analysis results for multiple tools and samples in a single report
2016 Standout
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Deriving a multivariate αCO conversion function using the [CII]/CO(1-0) ratio and its application to molecular gas scaling relations
2017 StandoutNobel
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
TRANSIT CONFIRMATION AND IMPROVED STELLAR AND PLANET PARAMETERS FOR THE SUPER-EARTH HD 97658 b AND ITS HOST STAR
2014 StandoutNobel
Works of Andrew E. Jaffe being referenced
Genome-Wide Analysis of Promoter Methylation Associated with Gene Expression Profile in Pancreatic Adenocarcinoma
2011
Hypomethylation of the IL17RC Promoter in Peripheral Blood Leukocytes Is Not A Hallmark of Age-Related Macular Degeneration
2013
Genetic and epigenetic analysis of schizophrenia in blood—a no-brainer?
2016
Polyester : simulating RNA-seq datasets with differential transcript expression
2015
Significance analysis and statistical dissection of variably methylated regions
2011
Use of Postmortem Human Dura Mater and Scalp for Deriving Human Fibroblast Cultures
2012
Identification and prioritization of gene sets associated with schizophrenia risk by co-expression network analysis in human brain
2018
Global DNA hypomethylation is associated with in utero exposure to cotinine and perfluorinated alkyl compounds
2010
GAD1 alternative transcripts and DNA methylation in human prefrontal cortex and hippocampus in brain development, schizophrenia
2017
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
2021
Mouse-Human Experimental Epigenetic Analysis Unmasks Dietary Targets and Genetic Liability for Diabetic Phenotypes
2015
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
2016
Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies
2012
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
2014 Standout
Developmental regulation of human cortex transcription and its clinical relevance at single base resolution
2014
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
2012 Standout
Prenatal Expression Patterns of Genes Associated With Neuropsychiatric Disorders
2014
Accounting for cellular heterogeneity is critical in epigenome-wide association studies
2014
Bayesian Methods in Cosmology
2009