Citation Impact
Citing Papers
2016 Standout
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
2019 Standout
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
2020 Standout
A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
2020 Standout
ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes
2018
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
2024 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Improved metagenomic analysis with Kraken 2
2019 Standout
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
2020 Standout
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
2013 Standout
OrthoFinder: phylogenetic orthology inference for comparative genomics
2019 Standout
Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a
2019 StandoutNobel
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
2014 Standout
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
2020 Standout
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
2016 Standout
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
2016
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
2014 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
2016 Standout
Phylogenomic Analysis of Spiders Reveals Nonmonophyly of Orb Weavers
2014
RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes
2017 StandoutNobel
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)
2015
Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems
2019 StandoutNobel
Novel soil-inhabiting clades fill gaps in the fungal tree of life
2017
A Broad-Spectrum Inhibitor of CRISPR-Cas9
2017 StandoutNobel
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
2016 Standout
The pangenome of an agronomically important crop plant Brassica oleracea
2016 Standout
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
2018 Standout
Broad-spectrum enzymatic inhibition of CRISPR-Cas12a
2019 StandoutNobel
A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia
2012
The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
2020 Standout
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
CasX enzymes comprise a distinct family of RNA-guided genome editors
2019 StandoutNatureNobel
Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae)
2017
Evolutionary history of Coleoptera revealed by extensive sampling of genes and species
2018 Standout
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
2016 StandoutNatureNobel
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
ModelFinder: fast model selection for accurate phylogenetic estimates
2017 Standout
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
raxmlGUI: a graphical front-end for RAxML
2011 Standout
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
2017 Standout
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
2014 Standout
UFBoot2: Improving the Ultrafast Bootstrap Approximation
2017 Standout
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
2018 StandoutScienceNobel
Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets
2017
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
2018 Standout
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
2016 Standout
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
2018 Standout
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
2019 Standout
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
2021
Natural Products as Sources of New Drugs from 1981 to 2014
2016 Standout
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
2018 Standout
Using Supermatrices for Phylogenetic Inquiry: An Example Using the Sedges
2012
Flavonolignans from Aspergillus iizukae, a Fungal Endophyte of Milk Thistle (Silybum marianum)
2014
Works of Andre J. Aberer being referenced
Uncovering Hidden Phylogenetic Consensus in Large Data Sets
2011
The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data
2014
Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects
2013
RAxML-Light: a tool for computing terabyte phylogenies
2012
Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice
2012
The Phylogenetic Likelihood Library
2014
ExaML version 3: a tool for phylogenomic analyses on supercomputers
2015
Parallelized phylogenetic post-analysis on multi-core architectures
2010