Citation Impact
Citing Papers
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
2009 Standout
Functional Extinction of Birds Drives Rapid Evolutionary Changes in Seed Size
2013 StandoutScience
Sequencing and Analysis of Neanderthal Genomic DNA
2006 StandoutScienceNobel
Resolution of ray-finned fish phylogeny and timing of diversification
2012 Standout
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
2024 Standout
The performance of coalescent-based species tree estimation methods under models of missing data
2018
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference
2009
Rapid progress on the vertebrate tree of life
2010
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
2010
A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians
2011
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
2013 Standout
The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte
2018
What are the consequences of combining nuclear and mitochondrial data for phylogenetic analysis? Lessons from Plethodonsalamanders and 13 other vertebrate clades
2011
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics
2007
Molecular breeding of polymerases for amplification of ancient DNA
2007 StandoutNobel
Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae
2005 StandoutNatureNobel
Ancient DNA
2001 StandoutNobel
Phylogenomics and the reconstruction of the tree of life
2005
CONTINUOUS AND ARRESTED MORPHOLOGICAL DIVERSIFICATION IN SISTER CLADES OF CHARACIFORM FISHES: A PHYLOMORPHOSPACE APPROACH
2008
DID EGG-LAYING BOAS BREAK DOLLO'S LAW? PHYLOGENETIC EVIDENCE FOR REVERSAL TO OVIPARITY IN SAND BOAS (ERYX: BOIDAE)
2009
Phylogenetic relationships of phrynosomatid lizards based on nuclear and mitochondrial data, and a revised phylogeny for Sceloporus
2009
A Complete mtDNA Genome of an Early Modern Human from Kostenki, Russia
2010 StandoutNobel
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
2010 StandoutNature
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
2010
The Neandertal genome and ancient DNA authenticity
2009 StandoutNobel
Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution
2005
Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles
2012
Structural absorption by barbule microstructures of super black bird of paradise feathers
2017 Standout
VERTEBRAL EVOLUTION AND THE DIVERSIFICATION OF SQUAMATE REPTILES
2011
Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA
2012 StandoutNobel
The supermatrix approach to systematics
2006
Revealing pancrustacean relationships: Phylogenetic analysis of ribosomal protein genes places Collembola (springtails) in a monophyletic Hexapoda and reinforces the discrepancy between mitochondrial and nuclear DNA markers
2008
Phylogenomic Analysis Supports the Monophyly of Cryptophytes and Haptophytes and the Association of Rhizaria with Chromalveolates
2007
Genome-scale data, angiosperm relationships, and ‘ending incongruence’: a cautionary tale in phylogenetics
2004
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Large multi-gene phylogenetic trees of the grasses (Poaceae): Progress towards complete tribal and generic level sampling
2008
A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study
2007
Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae)
2008
Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1: A new phylogenetic marker for reptiles
2008
Dense Taxonomic EST Sampling and Its Applications for Molecular Systematics of the Coleoptera (Beetles)
2005
Interactions between colour-producing mechanisms and their effects on the integumentary colour palette
2017
Application of Phylogenetic Networks in Evolutionary Studies
2005 Standout
Tunicates and not cephalochordates are the closest living relatives of vertebrates
2006 StandoutNature
The prevalence of terraced treescapes in analyses of phylogenetic data sets
2018
Neandertal DNA Sequences and the Origin of Modern Humans
1997 StandoutNobel
Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling
2012
The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)
2009
Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
2009 StandoutNobel
Impact of Missing Data on Phylogenies Inferred from Empirical Phylogenomic Data Sets
2012
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
2007 Standout
Broad phylogenomic sampling improves resolution of the animal tree of life
2008 StandoutNature
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
2010
Computational challenges in the analysis of ancient DNA
2010 StandoutNobel
Molecular phylogeny of the scincid lizards of New Caledonia and adjacent areas: Evidence for a single origin of the endemic skinks of Tasmantis
2007
Ancient DNA: Methodological challenges
1994 StandoutNobel
Evolutionary history of Coleoptera revealed by extensive sampling of genes and species
2018 Standout
Analysis of one million base pairs of Neanderthal DNA
2006 StandoutNatureNobel
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
2007 Standout
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
2013 Standout
Phylogenomics
2005
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
2006 StandoutNobel
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
2007 Standout
Phylogenetic Supermatrix Analysis of GenBank Sequences from 2228 Papilionoid Legumes
2006
Amino Acid Racemization and the Preservation of Ancient DNA
1996 StandoutScienceNobel
Molecular Coproscopy: Dung and Diet of the Extinct Ground Sloth Nothrotheriops shastensis
1998 StandoutScienceNobel
Patterns of damage in genomic DNA sequences from a Neandertal
2007 StandoutNobel
Molecular phylogeny of the extinct ground sloth Mylodon darwinii.
1996 StandoutNobel
Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees
2019
Genetic Analyses from Ancient DNA
2004 StandoutNobel
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
2007 Standout
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
2021 Standout
Early Allelic Selection in Maize as Revealed by Ancient DNA
2003 StandoutScienceNobel
UFBoot2: Improving the Ultrafast Bootstrap Approximation
2017 Standout
To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods
2017
A Rapid Bootstrap Algorithm for the RAxML Web Servers
2008 Standout
The cultural niche: Why social learning is essential for human adaptation
2011 Standout
Cascading Effects of Bird Functional Extinction Reduce Pollination and Plant Density
2011 Science
GENOME TREES AND THE NATURE OF GENOME EVOLUTION
2005
DNA phylogeny of the marsupial wolf resolved
1997
High-resolution species trees without concatenation
2007
Hylid Frog Phylogeny and Sampling Strategies for Speciose Clades
2005
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
2012 Standout
Combining Phylogenomics and Fossils in Higher-Level Squamate Reptile Phylogeny: Molecular Data Change the Placement of Fossil Taxa
2010
The phylogeny of advanced snakes (Colubroidea), with discovery of a new subfamily and comparison of support methods for likelihood trees
2010
Branch Lengths, Support, and Congruence: Testing the Phylogenomic Approach with 20 Nuclear Loci in Snakes
2008
Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles
2009
Defaunation in the Anthropocene
2014 StandoutScience
Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology
2007
A Phylogenomic Study of Birds Reveals Their Evolutionary History
2008 StandoutScience
Full of Sound and Fury: History of Ancient DNA
1999
Phylogenetic Inference Using Whole Genomes
2008
Asynchronous Colonization of Madagascar by the Four Endemic Clades of Primates, Tenrecs, Carnivores, and Rodents as Inferred from Nuclear Genes
2005
Taxon Sampling Affects Inferences of Macroevolutionary Processes from Phylogenetic Trees
2008
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
2011
Widespread Origins of Domestic Horse Lineages
2001 StandoutScience
phytools: an R package for phylogenetic comparative biology (and other things)
2011 Standout
Animal Evolution and the Molecular Signature of Radiations Compressed in Time
2005 Science
Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes
2009 StandoutScienceNobel
Works of Amy C. Driskell being referenced
The challenge of constructing large phylogenetic trees
2003
Phylogeny and evolution of the Australo-Papuan honeyeaters (Passeriformes, Meliphagidae)
2003
Phylogenetic relationships of the thylacine (Mammalia: Thylacinidae) among dasyuroid marsupials : evidence from cytochrome b DNA sequences
1992
A new endemic family of New Zealand passerine birds: adding heat to a biodiversity hotspot
2007
Supertree Bootstrapping Methods for Assessing Phylogenetic Variation among Genes in Genome-Scale Data Sets
2006
Prospects for Building the Tree of Life from Large Sequence Databases
2004 Science
The evolution of black plumage from blue in Australian fairy‐wrens (Maluridae): genetic and structural evidence
2010
Inferring Phylogeny Using Genomic Characters: A Case Study Using Land Plant Plastomes
2004