Alon Shaiber

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs

Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14

Zero‐shot mutation effect prediction on protein stability and function using RoseTTAFold

Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle

ColabFold: making protein folding accessible to all

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems

Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold

MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics

Current Concepts, Opportunities, and Challenges of Gut Microbiome-Based Personalized Medicine in Nonalcoholic Fatty Liver Disease

Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.

AASLD Practice Guidance on the clinical assessment and management of nonalcoholic fatty liver disease

Acquisition of the arginine deiminase system benefits epiparasitic Saccharibacteria and their host bacteria in a mammalian niche environment

Strain-Level Variation and Diverse Host Bacterial Responses in Episymbiotic Saccharibacteria

Evolutionary-scale prediction of atomic-level protein structure with a language model

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

Isolation and cultivation of candidate phyla radiation Saccharibacteria (TM7) bacteria in coculture with bacterial hosts

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics

Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes