Citation Impact
Citing Papers
An enumerative algorithm for de novo design of proteins with diverse pocket structures
2020 StandoutNobel
Removing T-cell epitopes with computational protein design
2014 StandoutNobel
Generation of ordered protein assemblies using rigid three-body fusion
2021 StandoutNobel
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion
2020 StandoutNobel
Computational design of closely related proteins that adopt two well-defined but structurally divergent folds
2020 StandoutNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
From residue coevolution to protein conformational ensembles and functional dynamics
2015
Hallucinating symmetric protein assemblies
2022 StandoutScienceNobel
Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action
2019 StandoutNobel
Piezo1 ion channel pore properties are dictated by C-terminal region
2015 StandoutNobel
Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4
2015 StandoutNobel
Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway
2015 StandoutNobel
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
2013
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment
2010
The Pfam protein families database: towards a more sustainable future
2015 Standout
Highly active enzymes by automated combinatorial backbone assembly and sequence design
2018
The Structure of a Conserved Piezo Channel Domain Reveals a Topologically Distinct β Sandwich Fold
2014
PDBsum additions
2013
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants
2021
Assessment of the optimization of affinity and specificity at protein–DNA interfaces
2009 StandoutNobel
Use of Structural Phylogenetic Networks for Classification of the Ferritin-like Superfamily
2012
RepeatsDB: a database of tandem repeat protein structures
2013
Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3
2015 StandoutNobel
Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions
2014
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource
2012
Pfam: the protein families database
2013 Standout
Design of proteins from smaller fragments—learning from evolution
2014
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
Expanding the Enzyme Universe: Accessing Non‐Natural Reactions by Mechanism‐Guided Directed Evolution
2015 StandoutNobel
Protein function from its emergence to diversity in contemporary proteins
2015
Rational design of α-helical tandem repeat proteins with closed architectures
2015 StandoutNatureNobel
Piezos thrive under pressure: mechanically activated ion channels in health and disease
2017 StandoutNobel
The carbohydrate-active enzymes database (CAZy) in 2013
2013 Standout
Improved protein structure refinement guided by deep learning based accuracy estimation
2021 StandoutNobel
Protein–DNA Interactions: Amino Acid Conservation and the Effects of Mutations on Binding Specificity
2002
The RCSB Protein Data Bank: new resources for research and education
2012
An Ancient Fingerprint Indicates the Common Ancestry of Rossmann-Fold Enzymes Utilizing Different Ribose-Based Cofactors
2016
Role of backbone strain in de novo design of complex α/β protein structures
2021 StandoutNobel
The coming of age of de novo protein design
2016 StandoutNatureNobel
CATH: an expanded resource to predict protein function through structure and sequence
2016
Structure of the mechanically activated ion channel Piezo1
2017 StandoutNatureNobel
HMMER web server: 2015 update
2015
MetalPDB: a database of metal sites in biological macromolecular structures
2012
Advances and pitfalls of protein structural alignment
2009
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein
2020 Standout
Scalable web services for the PSIPRED Protein Analysis Workbench
2013
Design of metalloproteins and novel protein folds using variational autoencoders
2018
What Makes a Protein Fold Amenable to Functional Innovation? Fold Polarity and Stability Trade-offs
2013
De novo protein design: how do we expand into the universe of possible protein structures?
2015
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
The SWISS-MODEL Repository—new features and functionality
2016
Connectivity between Catalytic Landscapes of the Metallo-β-Lactamase Superfamily
2014
The robustness and innovability of protein folds
2014
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
2016
Structure‐based redesign of proteins for minimal T‐cell epitope content
2013
Simple yet functional phosphate-loop proteins
2018 StandoutNobel
The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY
2017 Standout
New perspectives on the diversification of theRNA interference system: insights from comparative genomics and smallRNA sequencing
2013
DALI and the persistence of protein shape
2019
PDBsum: Structural summaries of PDB entries
2017
A structural model of the active ribosome-bound membrane protein insertase YidC
2014
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
One contact for every twelve residues allows robust and accurate topology‐level protein structure modeling
2013 StandoutNobel
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery
2011 Standout
How significant is a protein structure similarity with TM-score = 0.5?
2010
Computational design of mechanically coupled axle-rotor protein assemblies
2022 StandoutScienceNobel
The Protein Structure Prediction Revolution and Its Implications for Medicine
2023 StandoutNobel
Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein
2019 StandoutNobel
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
2016 StandoutNobel
Reshaping de Novo Protein Switches into Bioresponsive Materials for Biomarker, Toxin, and Viral Detection
2022 StandoutNobel
De novo design of protein homodimers containing tunable symmetric protein pockets
2022 StandoutNobel
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
2011 Standout
Design of Heme Enzymes with a Tunable Substrate Binding Pocket Adjacent to an Open Metal Coordination Site
2023 StandoutNobel
Reconfigurable asymmetric protein assemblies through implicit negative design
2022 StandoutScienceNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Works of Alison Cuff being referenced
The CATH Hierarchy Revisited—Structural Divergence in Domain Superfamilies and the Continuity of Fold Space
2009
The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies
2008
CATH: comprehensive structural and functional annotations for genome sequences
2014
Extending CATH: increasing coverage of the protein structure universe and linking structure with function
2010
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies
2012
Integrating mutation data and structural analysis of the TP53 tumor-suppressor protein
2002
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
2012