Citation Impact
Citing Papers
Optimal Dissociation Methods Differ for N - and O -Glycopeptides
2020 StandoutNobel
Tools for Label-free Peptide Quantification
2012
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
2008
A Computational Tool to Detect and Avoid Redundancy in Selected Reaction Monitoring
2012
Honokiol blocks and reverses cardiac hypertrophy in mice by activating mitochondrial Sirt3
2015 Standout
The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
2013
xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data
2013
Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
2009
Extensive identification and analysis of conserved small ORFs in animals
2015
Proteomic dataset for altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
2016 StandoutNobel
Envelope: interactive software for modeling and fitting complex isotope distributions
2008
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
2010 Standout
Cell type-selective secretome profiling in vivo
2020 StandoutNobel
Efficient mining of myxobacterial metabolite profiles enabled by liquid chromatography–electrospray ionisation-time-of-flight mass spectrometry and compound-based principal component analysis
2008
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
2016
Defining the proteolytic landscape during enterovirus infection
2020 StandoutNobel
Signal Processing in Proteomics
2009
Label-free Quantification and Shotgun Analysis of Complex Proteomes by One-dimensional SDS-PAGE/NanoLC-MS
2012
MassChroQ: A versatile tool for mass spectrometry quantification
2011
Gut microbiota functions: metabolism of nutrients and other food components
2017 Standout
Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
2012
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
2016 Standout
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
2012 Standout
Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics
2010 StandoutNobel
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
2011
TFOS DEWS II pathophysiology report
2017 Standout
A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape
2019 StandoutNobel
OpenMS – A platform for reproducible analysis of mass spectrometry data
2017
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Revealing the human mucinome
2022 StandoutNobel
mzML—a Community Standard for Mass Spectrometry Data
2010
jmzML, an open‐source Java API for mzML, the PSI standard for MS data
2010
2016 update of the PRIDE database and its related tools
2015 Standout
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
2015 Standout
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
2012 Standout
Metabolomics: beyond biomarkers and towards mechanisms
2016 Standout
Analytical Methods in Untargeted Metabolomics: State of the Art in 2015
2015
A metabolic labeling approach for glycoproteomic analysis reveals altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
2016 StandoutNobel
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics
2020 StandoutNobel
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
2014 Standout
The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
2012
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
Recent developments in public proteomic MS repositories and pipelines
2009
Lysosome-targeting chimaeras for degradation of extracellular proteins
2020 StandoutNatureNobel
A Guide to Mass Spectrometry-Based Quantitative Proteomics
2018
Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics
2011
Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins
2014
Isotopic Signature Transfer and Mass Pattern Prediction (IsoStamp): An Enabling Technique for Chemically-Directed Proteomics
2011 StandoutNobel
Glycoproteomics
2022 StandoutNobel
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes
2016 Standout
MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data
2018 Standout
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
Using MetaboAnalyst 3.0 for Comprehensive Metabolomics Data Analysis
2016 Standout
Bioinformatics: The Next Frontier of Metabolomics
2014
Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein‐Profiling Technologies
2013
glyXtoolMS: An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry Data
2018
Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein‐Profiling Technologies
2005
Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments
2021
mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectrometric Data
2010
jmzI dentML API : A J ava interface to the mzI dentML standard for peptide and protein identification data
2012
Computation-Guided Rational Design of a Peptide Motif That Reacts with Cyanobenzothiazoles via Internal Cysteine–Lysine Relay
2018 StandoutNobel
Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis
2019 Standout
Machine Learning in Agriculture: A Review
2018 Standout
Algorithms and design strategies towards automated glycoproteomics analysis
2016
Impact of Natural Products on Developing New Anti-Cancer Agents
2009 Standout
An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics
2013
CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets
2011
apLCMS—adaptive processing of high-resolution LC/MS data
2009
Bioinformatics Tools for the Interpretation of Metabolomics Data
2017
Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress
2015
PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface
2015
How to submit MS proteomics data to ProteomeXchange via the PRIDE database
2014
Molecular Origin of Blood‐Based Infrared Spectroscopic Fingerprints**
2021 StandoutNobel
Comparative Analysis of Different Label-Free Mass Spectrometry Based Protein Abundance Estimates and Their Correlation with RNA-Seq Gene Expression Data
2012
Chemical Glycoproteomics
2016 StandoutNobel
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Alexandra Zerck being referenced
OpenMS – An open-source software framework for mass spectrometry
2008
LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells
2013
Optimal de novo Design of MRM Experiments for Rapid Assay Development in Targeted Proteomics
2010
An Iterative Strategy for Precursor Ion Selection for LC-MS/MS Based Shotgun Proteomics
2009