Citation Impact
Citing Papers
Potent CRISPR-Cas9 inhibitors from Staphylococcus genomes
2020 StandoutNobel
Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation
2015 Science
The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic T reg Cell Homeostasis
2013 StandoutScience
Non-antibiotic pharmaceuticals enhance the transmission of exogenous antibiotic resistance genes through bacterial transformation
2020
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
2013 Standout
Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity
2013 StandoutScience
Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy
2015 StandoutScience
RNA-Guided Human Genome Engineering via Cas9
2013 StandoutScience
Machine learning predicts new anti-CRISPR proteins
2020 StandoutNobel
The microbiota regulates type 2 immunity through RORγt + T cells
2015 StandoutScienceNobel
Functional metagenomics-guided discovery of potent Cas9 inhibitors in the human microbiome
2019
Soil biota, antimicrobial resistance and planetary health
2019
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
2012 Standout
Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children
2016 Science
Diagnosis and potential treatments for acute hepatopancreatic necrosis disease (AHPND): a review
2019
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
2012
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
2010
John Snow's legacy: epidemiology without borders
2013 StandoutNobel
Context matters — the complex interplay between resistome genotypes and resistance phenotypes
2012
Reduced maternal expression of adrenomedullin disrupts fertility, placentation, and fetal growth in mice
2006 StandoutNobel
Fate and effects of veterinary antibiotics in soil
2014
Elements of cancer immunity and the cancer–immune set point
2017 StandoutNature
Manipulating Bacterial Communities by in situ Microbiome Engineering
2016
Molecular mechanisms of antibiotic resistance
2014 Standout
Application of metagenomics in the human gut microbiome
2015
The antibiotic resistance “mobilome”: searching for the link between environment and clinic
2013
The microbiota in adaptive immune homeostasis and disease
2016 StandoutNature
The human gut virome: a multifaceted majority
2015
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
Human Genetics Shape the Gut Microbiome
2014 Standout
The Bacterial Microbiome and Virome Milestones of Infant Development
2016
Early life dynamics of the human gut virome and bacterial microbiome in infants
2015
Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
2017
Gut biogeography of the bacterial microbiota
2015 Standout
The Prehistory of Antibiotic Resistance
2016
Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer
2012 Standout
Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs
2013
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
2012
The Human Intestinal Microbiome in Health and Disease
2016 Standout
The role of the gut microbiota in nutrition and health
2012 Standout
Paralog Re-Emergence: A Novel, Historically Contingent Mechanism in the Evolution of Antimicrobial Resistance
2014
Intrinsic antibiotic resistance: Mechanisms, origins, challenges and solutions
2013
Microbial culturomics: paradigm shift in the human gut microbiome study
2012
Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
2016 Nature
The human gut virome: Inter-individual variation and dynamic response to diet
2011
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India
2014
What is a resistance gene? Ranking risk in resistomes
2014 Standout
Human nutrition, the gut microbiome and the immune system
2011 StandoutNature
Role of the Microbiota in Immunity and Inflammation
2014 Standout
Defining and combating antibiotic resistance from One Health and Global Health perspectives
2019
Phylogeny, culturing, and metagenomics of the human gut microbiota
2014
Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease
2016 Standout
Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake
2015
How glycan metabolism shapes the human gut microbiota
2012
The antibiotic resistome: what's new?
2014
Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota
2015
Pollution from azithromycin-manufacturing promotes macrolide-resistance gene propagation and induces spatial and seasonal bacterial community shifts in receiving river sediments
2019
Diet–microbiota interactions as moderators of human metabolism
2016 StandoutNature
Antibiotic resistance shaping multi-level population biology of bacteria
2013
Metal Resistance and Its Association With Antibiotic Resistance
2017
Assessing the Risk of Antibiotic Resistance Transmission from the Environment to Humans: Non-Direct Proportionality between Abundance and Risk
2016
Functional interactions between the gut microbiota and host metabolism
2012 StandoutNature
The potter’s wheel: the host’s role in sculpting its microbiota
2011
Environmental factors influencing the development and spread of antibiotic resistance
2017 Standout
The Devil Lies in the Details: How Variations in Polysaccharide Fine-Structure Impact the Physiology and Evolution of Gut Microbes
2014
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts
2011
Ribosome-targeting antibiotics and mechanisms of bacterial resistance
2013
Biogeography and individuality shape function in the human skin metagenome
2014 Nature
Antibiotic-Induced Changes in the Intestinal Microbiota and Disease
2016
Immunoglobulin A
2011
Review of Antimicrobial Resistance in the Environment and Its Relevance to Environmental Regulators
2016
Uremic solutes from colon microbes
2012
The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria
2013 Standout
From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites
2016 Standout
Horizontal Gene Exchange in Environmental Microbiota
2011
Unlocking the potential of metagenomics through replicated experimental design
2012
Current understanding of the human microbiome
2018 Standout
Development and Applications of CRISPR-Cas9 for Genome Engineering
2014 Standout
An enteric virus can replace the beneficial function of commensal bacteria
2014 Nature
Antibiotic resistance in the environment
2021 Standout
Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses
2012
The structure and diversity of human, animal and environmental resistomes
2016
The first 1000 cultured species of the human gastrointestinal microbiota
2014
Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data
2017
Intestinal Commensal Microbes as Immune Modulators
2012
A cornucopia of human polyomaviruses
2013
Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach
2014
The Virome in Mammalian Physiology and Disease
2014
Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities
2020
Factors Regulating Trophoblast Migration and Invasiveness: Possible Derangements Contributing to Pre-eclampsia and Fetal Injury11Studies from the authors’ laboratory summarized in this article were supported by the Canadian Institutes of Health Research Grant MOP-36446
2003
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Diversity, stability and resilience of the human gut microbiota
2012 StandoutNature
Investigating the biological and clinical significance of human dysbioses
2011
A 20-year retrospective review of global aquaculture
2021 StandoutNature
Compartmentalized and systemic control of tissue immunity by commensals
2013
Immunoglobulin A Coating Identifies Colitogenic Bacteria in Inflammatory Bowel Disease
2014
The Scourge of Antibiotic Resistance: The Important Role of the Environment
2013
Metagenomics and Personalized Medicine
2011
Topographic diversity of fungal and bacterial communities in human skin
2013 StandoutNature
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
2013 Standout
Does antifouling paint select for antibiotic resistance?
2017
Bacterial phylogeny structures soil resistomes across habitats
2014 Nature
Composition of the early intestinal microbiota
2012
A conceptual framework for the environmental surveillance of antibiotics and antibiotic resistance
2019
Prevalence of Antibiotic Resistome in Ready-to-Eat Salad
2020
Antibacterial drug discovery in the resistance era
2016 StandoutNature
Mining the Human Gut Microbiota for Effector Strains that Shape the Immune System
2014
Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
2011
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
2013 Nature
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
2012
Comparison of Metals and Tetracycline as Selective Agents for Development of Tetracycline Resistant Bacterial Communities in Agricultural Soil
2017
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes
2020
Antibiotic resistance: turning evolutionary principles into clinical reality
2020
Antibiotic Resistance in Plant-Pathogenic Bacteria
2018
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
2014
Classification and quantification of bacteriophage taxa in human gut metagenomes
2014
Interactions Between the Microbiota and the Immune System
2012 StandoutScience
Healthy human gut phageome
2016
Childhood undernutrition, the gut microbiota, and microbiota-directed therapeutics
2016 Science
Microbes inside—from diversity to function: the case of Akkermansia
2012
Identifying Gut Microbe–Host Phenotype Relationships Using Combinatorial Communities in Gnotobiotic Mice
2014
Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy
2015
Evolution and Ecology of CRISPR
2016
CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection
2011
Honor Thy Gut Symbionts Redux
2012 Science
Human Microbiome in Health and Disease
2011
Antimicrobial use in aquaculture re‐examined: its relevance to antimicrobial resistance and to animal and human health
2013
Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
2014
CRISPR-Cas Systems
2012
Country-specific antibiotic use practices impact the human gut resistome
2013
Genomics and the evolution of antibiotic resistance
2016
Worldwide emergence of resistance to antifungal drugs challenges human health and food security
2018 StandoutScience
Diverse and abundant antibiotic resistance genes in Chinese swine farms
2013 Standout
Identification of simple arylfluorosulfates as potent agents against resistant bacteria
2021 StandoutNobel
The Human Gut Microbiota and Undernutrition
2012
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
2012
The Human Microbiome: Our Second Genome
2012
Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches
2017
Human Health Risk Assessment (HHRA) for Environmental Development and Transfer of Antibiotic Resistance
2013
Host-Gut Microbiota Metabolic Interactions
2012 StandoutScience
Using metagenomics to investigate human and environmental resistomes
2017
The ecology of the microbiome: Networks, competition, and stability
2015 StandoutScience
Cancer and the microbiota
2015 Science
The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria
2014
The Human Gut Microbiome: Ecology and Recent Evolutionary Changes
2010
Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii , studied in twins
2011
The Long-Term Stability of the Human Gut Microbiota
2013 StandoutScience
A rifamycin inactivating phosphotransferase family shared by environmental and pathogenic bacteria
2014
Microbes Central to Human Reproduction
2014
Antibiotics and the gut microbiota
2014
The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome
2015
Works of Alejandro Reyes being referenced
The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens
2012 Science
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut
2014
Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing
2012
Maternal plasma cellular fibronectin concentrations in normal and preeclamptic pregnancies: A longitudinal study for early prediction of preeclampsia
2002
Going viral: next-generation sequencing applied to phage populations in the human gut
2012
PirVP genes causing AHPND identified in a new Vibrio species (Vibrio punensis) within the commensal Orientalis clade
2018
Maternal plasma cellular fibronectin concentrations in normal and preeclamptic pregnancies: A longitudinal study for early prediction of preeclampsia
2002
Gnotobiotic mouse model of phage–bacterial host dynamics in the human gut
2013
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
2011
Identification of MW Polyomavirus, a Novel Polyomavirus in Human Stool
2012
Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
2015