Standout Papers
Citation Impact
Citing Papers
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
Framework for a Protein Ontology
2007
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
2021 Standout
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
2014
MIMIC-III, a freely accessible critical care database
2016 Standout
The Gene Ontology Resource: 20 years and still GOing strong
2018 Standout
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
2016 Standout
Phenotype ontologies: the bridge between genomics and evolution
2007
Reducing the Frequency of Errors in Medicine Using Information Technology
2001 Standout
Archetype-Based Electronic Health Records: A Literature Review and Evaluation of Their Applicability to Health Data Interoperability and Access
2009
High-throughput functional annotation and data mining with the Blast2GO suite
2008 Standout
An integrative model of shared decision making in medical encounters
2005 Standout
Interface Terminologies: Facilitating Direct Entry of Clinical Data into Electronic Health Record Systems
2006 Standout
Distributed cognition and knowledge-based controlled medical terminologies
1998
Representing Thoughts, Words, and Things in the UMLS
1998
Computer-based clinical decision aids. A review of methods and assessment of systems
1996
NCI Thesaurus: A semantic model integrating cancer-related clinical and molecular information
2006
An Electronic Health Record Based on Structured Narrative
2007
Effects of Computerized Clinical Decision Support Systems on Practitioner Performance and Patient Outcomes
2005 Standout
ChEMBL: a large-scale bioactivity database for drug discovery
2011 Standout
Recommendations for Responsible Monitoring and Regulation of Clinical Software Systems
1997
The REDCap consortium: Building an international community of software platform partners
2019 Standout
Towards Semantic Interoperability for Electronic Health Records
2007
Representing Patient Preference-Related Concepts for Inclusion in Electronic Health Records
2001
ClinVar: public archive of relationships among sequence variation and human phenotype
2013 Standout
Definitions and Qualifiers in SNOMED CT
2009
Techniques: Bioprospecting historical herbal texts by hunting for new leads in old tomes
2004
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
2007 Standout
OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders
2014 Standout
The eICU Collaborative Research Database, a freely available multi-center database for critical care research
2018 Standout
Multimodal biomedical AI
2022 Standout
Drug repurposing: progress, challenges and recommendations
2018 Standout
The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web
2011
The Sequence Ontology: a tool for the unification of genome annotations
2005
What is done, what is needed and what is realistic to expect from medical informatics standards
1998
Functional MRI at the crossroads
2008
Data from clinical notes: a perspective on the tension between structure and flexible documentation
2011
MIMIC-IV, a freely accessible electronic health record dataset
2023 Standout
A Logical Foundation for Representation of Clinical Data
1994
International classification of diseases, 10th edition, clinical modification and procedure coding system: descriptive overview of the next generation HIPAA code sets
2010
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
2013 Standout
The Impact of eHealth on the Quality and Safety of Health Care: A Systematic Overview
2011 Standout
Uberon, an integrative multi-species anatomy ontology
2012
A guide to deep learning in healthcare
2018 Standout
Normalized names for clinical drugs: RxNorm at 6 years
2011 Standout
Modeling biomedical experimental processes with OBI
2010
The ChEMBL database in 2017
2016 Standout
Exploiting drug-disease relationships for computational drug repositioning
2011
Terminologia Anatomica: Considered from the perspective of next-generation knowledge sources
2001
The human cadaver in the age of biomedical informatics
2002 Standout
Evolution of the Sequence Ontology terms and relationships
2010
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
2007 Standout
Disease Ontology: a backbone for disease semantic integration
2011
A Framework for Comprehensive Health Terminology Systems in the United States: Development Guidelines, Criteria for Selection, and Public Policy Implications
1998
The Artificial Intelligence Clinician learns optimal treatment strategies for sepsis in intensive care
2018 Standout
Clinical research informatics: a conceptual perspective
2012
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
2016 Standout
HL7 Clinical Document Architecture, Release 2
2005
Toward a Medical-concept Representation Language
1994
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
ClinVar: public archive of interpretations of clinically relevant variants
2015 Standout
Recurrent Neural Networks for Multivariate Time Series with Missing Values
2018 Standout
Medical documentation: Part of the solution, or part of the problem? A narrative review of the literature on the time spent on and value of medical documentation
2014
Test Selection Measures
1989
Artificial intelligence in healthcare
2018 Standout
Hepatic Stellate Cells: Protean, Multifunctional, and Enigmatic Cells of the Liver
2008 Standout
Mining electronic health records: towards better research applications and clinical care
2012 Standout
Some Unintended Consequences of Information Technology in Health Care: The Nature of Patient Care Information System-related Errors
2003 Standout
Spatial location and its relevance for terminological inferences in bio-ontologies
2007
The immune epitope database (IEDB) 3.0
2014 Standout
Chemical Entities of Biological Interest: an update
2009
Physician Time Spent Using the Electronic Health Record During Outpatient Encounters
2020 Standout
The Human Disease Ontology 2022 update
2021
A Review of Imaging Techniques for Plant Phenotyping
2014 Standout
Ontology of core data mining entities
2014
Putting data integration into practice: using biomedical terminologies to add structure to existing data sources.
2003
The Copernican era of healthcare terminology: a re-centering of health information systems.
1998
Desiderata for Controlled Medical Vocabularies in the Twenty-First Century
1998
Clinical Terminology: Why Is it so Hard?
1999
miRDB: an online database for prediction of functional microRNA targets
2019 Standout
Detailed Clinical Models: A Review
2010
From hospital information systems to health information systems. Problems, challenges, perspectives.
2001
Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development
2010
The National Center for Biomedical Ontology: Advancing Biomedicine through Structured \nOrganization of Scientific Knowledge
2006
Probabilistic Reasoning in Intelligent Systems: Networks of Plausible Inference
1988 Standout
Common medical terminology comes of age, Part One: Standard language improves healthcare quality.
2001
PubChem 2023 update
2022 Standout
Systematic evaluation of natural phenolic antioxidants from 133 Indian medicinal plants
2006 Standout
Additional Gene Ontology structure for improved biological reasoning
2006
Explainable Artificial Intelligence (XAI): What we know and what is left to attain Trustworthy Artificial Intelligence
2023 Standout
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
2017 Standout
Experience sampling during fMRI reveals default network and executive system contributions to mind wandering
2009 Standout
Data management pipeline for plant phenotyping in a multisite project
2012
Semantic features of an enterprise interface terminology for SNOMED RT.
2001
Medical Records and Other Stories: a Narratological Framework
1996
The DisGeNET knowledge platform for disease genomics: 2019 update
2019 Standout
Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology
2007
Concept of Sample in OMICS Technology
2006
Compositional concept representation using SNOMED: towards further convergence of clinical terminologies.
1998
Modeling sample variables with an Experimental Factor Ontology
2010
A skeptical theory of inheritance in nonmonotonic semantic networks
1990
The diagnostic odds ratio: a single indicator of test performance
2003 Standout
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
From Hospital Information Systems to Health Information Systems - Problems, Challenges, Perspectives
2001
SNOMED RT: a reference terminology for health care.
1997
A clinical terminology in the post modern era: pragmatic problem list development.
1998
Human Disease Ontology 2018 update: classification, content and workflow expansion
2018
Medical work and the computer-based patient record: a sociological perspective.
1998
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
2013
Desiderata for a clinical terminology server.
1999
Works of Alan Rector being referenced
The manchester OWL syntax
2006
A Comprehensive Approach to Developing and Integrating Multilingual Classifications: GALEN's Classification Workbench
1998
Analysis of propagation along transitive roles: Formalisation of the GALEN experience with Medical Ontologies.
2002
A Description Logic Based Schema for the Classification of Medical Data
1996
Granularity, scale and collectivity: When size does and does not matter
2005
Getting the foot out of the pelvis: modeling problems affecting use of SNOMED CT hierarchies in practical applications
2011
Medical-concept Models and Medical Records: An Approach Based on GALEN and PEN&PAD
1995
Why Do It the Hard Way? The Case for an Expressive Description Logic for SNOMED
2008
The galen project
1994
Integration of tools for binding archetypes to SNOMED CT
2008
Modeling Nursing Terminology Using the GRAIL Representation Language
1998
Relations in biomedical ontologies
2005 Standout
The GRAIL concept modelling language for medical terminology
1997
Reconciling users' needs and formal requirements: issues in developing a reusable ontology for medicine
1998
A formal representation for messages containing compositional expressions
2003
Thesauri and Formal Classifications: Terminologies for People and Machines
1998
Goals for concept representation in the GALEN project.
1993
The interface between information, terminology, and inference models.
2001
Rules for sequential diagnosis
1975
A Framework for Modelling the Electronic Medical Record
1993
Semantic issues in integrating data from different models to achieve data interoperability.
2007
Validating clinical terminology structures: integration and cross-validation of Read Thesaurus and GALEN.
1998
A Terminology Server for Medical Language and Medical Information Systems
1995
The PEN&PAD data entry system: from prototype to practical system.
1996
Defaults, exceptions and ambiguity in a medical knowledge representation system
1986
A reference terminology for drugs.
1999
Scale and context: issues in ontologies to link health- and bio-informatics.
2002
Models and Inference Methods for Clinical Systems: A Principled Approach
2004