Citation Impact
Citing Papers
Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock
2023 StandoutNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Epigenetic regulation of hypoxic sensing disrupts cardiorespiratory homeostasis
2012 StandoutNobel
Hypoxia-inducible factors and RAB22A mediate formation of microvesicles that stimulate breast cancer invasion and metastasis
2014 StandoutNobel
The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach
2021 StandoutNobel
Evolutionary history of Tibetans inferred from whole-genome sequencing
2017 StandoutNobel
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging
2015
Placental contribution to the origins of sexual dimorphism in health and diseases: sex chromosomes and epigenetics
2013
Sexually dimorphic characteristics of the small intestine and colon of prepubescent C57BL/6 mice
2014
Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m 6 A-demethylation of NANOG mRNA
2016 StandoutNobel
Genetic adaptation to high altitude in the Ethiopian highlands
2012
Triple-Negative Breast Cancer
2010 Standout
Early skin-to-skin contact for mothers and their healthy newborn infants
2016 Standout
The molecular underpinning of lobular histological growth pattern: a genome‐wide transcriptomic analysis of invasive lobular carcinomas and grade‐ and molecular subtype‐matched invasive ductal carcinomas of no special type
2009
Constitutional aneuploidy and cancer predisposition
2009
Implications of conformational flexibility, lipid binding, and regulatory domains in cell-traversal protein CelTOS for apicomplexan migration
2022
Genetic effects on gene expression across human tissues
2017 StandoutNature
The FGF family: biology, pathophysiology and therapy
2009 Standout
Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu
2008 StandoutNature
Synergistic antitumor interactions between MK-1775 and panobinostat in preclinical models of pancreatic cancer
2014
Features of the dendritic cell lineage
2010 StandoutNobel
Cell cycle proteins as promising targets in cancer therapy
2017 Standout
Discovery of a regioselectivity switch in nitrating P450s guided by molecular dynamics simulations and Markov models
2016 StandoutNobel
Forces stabilizing proteins
2014
Visualizing polynucleotide polymerase machines at work
2006 StandoutNobel
Landscape of X chromosome inactivation across human tissues
2017 Nature
Computationally designed libraries for rapid enzyme stabilization
2014 StandoutNobel
Histone Demethylase RBP2 Is Critical for Breast Cancer Progression and Metastasis
2014
Engineering functional thermostable proteins using ancestral sequence reconstruction
2022
A compendium of proteins that interact with HIF-1α
2017 StandoutNobel
Targeting oxidative stress in disease: promise and limitations of antioxidant therapy
2021 Standout
The road to fully programmable protein catalysis
2022 StandoutNatureNobel
Spackling the Crack: Stabilizing Human Fibroblast Growth Factor-1 by Targeting the N and C terminus β-Strand Interactions
2007
Computational Library Design for Increasing Haloalkane Dehalogenase Stability
2014 StandoutNobel
The strawberry: Composition, nutritional quality, and impact on human health
2011 Standout
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
The hypoxic tumor microenvironment: A driving force for breast cancer progression
2015 StandoutNobel
Comparison of Microarrays and RNA-Seq for Gene Expression Analyses of Dose-Response Experiments
2013
Exploring in vitro expression and immune potency in mice using mRNA encoding the Plasmodium falciparum malaria antigen, CelTOS
2022 StandoutNobel
Signaling and ligand interaction of ILT7: receptor‐mediated regulatory mechanisms for plasmacytoid dendritic cells
2010
2-Oxoglutarate-dependent dioxygenases in cancer
2020 Nobel
Gene expression profiling of choline-deprived neural precursor cells isolated from mouse brain
2004
The structural changes of T7 RNA polymerase from transcription initiation to elongation
2009 StandoutNobel
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
A series of PDB-related databanks for everyday needs
2014
FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants
2015 StandoutNobel
Enantioselective Enzymes by Computational Design and In Silico Screening
2015 StandoutNobel
Disulfide Bond Introduction for General Stabilization of Immunoglobulin Heavy-Chain Variable Domains
2008
Do anthocyanins and anthocyanidins, cancer chemopreventive pigments in the diet, merit development as potential drugs?
2009
Engineering proteins for thermostability through rigidifying flexible sites
2013
Sex differences in immune responses
2016 Standout
Multi‐template approach to modeling engineered disulfide bonds
2006
Next generation sequencing of sex-specific genes in the livers of obese ZSF1 rats
2015
Engineering a Disulfide Bond in the Lid Hinge Region of Rhizopus chinensis Lipase: Increased Thermostability and Altered Acyl Chain Length Specificity
2012
Oxidative stress response and Nrf2 signaling in aging
2015
Enhancing thermostability of a Rhizomucor miehei lipase by engineering a disulfide bond and displaying on the yeast cell surface
2009
Cytochrome P450 enzymes in drug metabolism: Regulation of gene expression, enzyme activities, and impact of genetic variation
2013 Standout
Effect of Conformational Dynamics on Substrate Recognition and Specificity as Probed by the Introduction of a de Novo Disulfide Bond into Cytochrome P450 2B1
2009
CLOCK:BMAL1 is a pioneer-like transcription factor
2014 StandoutNobel
Autochthonous tumors driven by Rb1 loss have an ongoing requirement for the RBP2 histone demethylase
2018 StandoutNobel
Plant Phenolics: Extraction, Analysis and Their Antioxidant and Anticancer Properties
2010 Standout
Slc15a4, AP-3, and Hermansky-Pudlak syndrome proteins are required for Toll-like receptor signaling in plasmacytoid dendritic cells
2010 StandoutNobel
Down Syndrome
2020 Standout
Hypoxia-inducible factor induces cysteine dioxygenase and promotes cysteine homeostasis in Caenorhabditis elegans
2023 StandoutNobel
Enzyme stabilization via computationally guided protein stapling
2017
The Structure of a Transcribing T7 RNA Polymerase in Transition from Initiation to Elongation
2008 StandoutScienceNobel
Improving Protein Expression, Stability, and Function with ProteinMPNN
2024 StandoutNobel
Unbiased, Genome-Wide In Vivo Mapping of Transcriptional Regulatory Elements Reveals Sex Differences in Chromatin Structure Associated with Sex-Specific Liver Gene Expression
2010
Sex and Gender Differences in Risk, Pathophysiology and Complications of Type 2 Diabetes Mellitus
2016 Standout
Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization
2022
Probing conformational changes in T7 RNA polymerase during initiation and termination by using engineered disulfide linkages
2005
Child Health, Developmental Plasticity, and Epigenetic Programming
2010
Genome‐wide identification of genes with amplification and/or fusion in small cell lung cancer
2013
Longer metaphase and fewer chromosome segregation errors in modern human than Neanderthal brain development
2022 StandoutNobel
Bone Marrow Stromal Cell Antigen 2 Is a Specific Marker of Type I IFN-Producing Cells in the Naive Mouse, but a Promiscuous Cell Surface Antigen following IFN Stimulation
2006
Screen-identified selective inhibitor of lysine demethylase 5A blocks cancer cell growth and drug resistance
2016
De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures
2017 StandoutNobel
Nomenclature of monocytes and dendritic cells in blood
2010 Standout
Principles of Protein Stability and Their Application in Computational Design
2018
Versatile Peptide C-Terminal Functionalization via a Computationally Engineered Peptide Amidase
2016 StandoutNobel
Improved outcomes for myeloid leukemia of Down syndrome: a report from the Children’s Oncology Group AAML0431 trial
2017
The role of hypoxia‐inducible factors in carotid body (patho) physiology
2018 StandoutNobel
Histone demethylase JMJD2C is a coactivator for hypoxia-inducible factor 1 that is required for breast cancer progression
2012 StandoutNobel
Regulation of cell proliferation by hypoxia-inducible factors
2015 StandoutNobel
Enhancing Protein Stability with Genetically Encoded Noncanonical Amino Acids
2018
Hypoxia-inducible factor 1 is required for remote ischemic preconditioning of the heart
2013 StandoutNobel
Nanobodies: Natural Single-Domain Antibodies
2013 Standout
Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations
2019 StandoutNobel
Works of Alan A. Dombkowski being referenced
Carcinogen-Altered Genes in Rat Esophagus Positively Modulated to Normal Levels of Expression by Both Black Raspberries and Phenylethyl Isothiocyanate
2008
Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins
2013
Cross-species Comparisons of Transcriptomic Alterations in Human and Rat Primary Hepatocytes Exposed to 2,3,7,8-Tetrachlorodibenzo-p-dioxin
2012
Identification and functional analysis of 9p24 amplified genes in human breast cancer
2011
Insights into Insulin-Mediated Regulation of CYP2E1: miR-132/-212 Targeting of CYP2E1 and Role of Phosphatidylinositol 3-Kinase, Akt (Protein Kinase B), Mammalian Target of Rapamycin Signaling in Regulating miR-132/-212 and miR-122/-181a Expression in Primary Cultured Rat Hepatocytes
2013
The role of the proto-oncogene ETS2 in acute megakaryocytic leukemia biology and therapy
2007
Transcriptional profiling of the age-related response to genotoxic stress points to differential DNA damage response with age
2009
Gene‐specific dye bias in microarray reference designs
2004
Transcriptional Profiling of Human Liver Identifies Sex-Biased Genes Associated with Polygenic Dyslipidemia and Coronary Artery Disease
2011
Protein disulfide engineering
2013
Mechanistic basis for the chemopreventive effects of black raspberries at a late stage of rat esophageal carcinogenesis
2011
Disulfide by Design™: a computational method for the rational design of disulfide bonds in proteins
2003
Disulfide recognition in an optimized threading potential
2000
Microarray analysis of differentially regulated genes in human neuronal and epithelial cell lines upon exposure to type A botulinum neurotoxin
2011
Effects of a Black Raspberry Diet on Gene Expression in the Rat Esophagus
2008
Using Disulfide Bond Engineering To Study Conformational Changes in the β′260-309 Coiled-Coil Region of Escherichia coli RNA Polymerase during σ 70 Binding
2002
Liver-Specific Hepatocyte Nuclear Factor-4α Deficiency: Greater Impact on Gene Expression in Male than in Female Mouse Liver
2008
Global Gene Expression Profiling Unveils S100A8/A9 as Candidate Markers in H-Ras-Mediated Human Breast Epithelial Cell Invasion
2008
Intrinsic Sex Differences in the Early Growth Hormone Responsiveness of Sex-Specific Genes in Mouse Liver
2010
Genomic amplification and a role in drug-resistance for the KDM5A histone demethylase in breast cancer.
2012
Differential gene expression, GATA1 target genes, and the chemotherapy sensitivity of Down syndrome megakaryocytic leukemia
2005
RUNX1 regulates phosphoinositide 3-kinase/AKT pathway: role in chemotherapy sensitivity in acute megakaryocytic leukemia
2009