Citation Impact
Citing Papers
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
CTLA4 blockade expands FoxP3+ regulatory and activated effector CD4+ T cells in a dose-dependent fashion
2008 StandoutNobel
Conserved N-terminal cysteine dioxygenases transduce responses to hypoxia in animals and plants
2019 StandoutScienceNobel
Nuclear Lamin-A Scales with Tissue Stiffness and Enhances Matrix-Directed Differentiation
2013 StandoutScience
Ten things you should know about transposable elements
2018
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites
2011
Core promoter T-blocks correlate with gene expression levels inC. elegans
2011
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
2011
Increased Regulatory T Cells Correlate With CD8 T-Cell Impairment and Poor Survival in Hepatocellular Carcinoma Patients
2007
Hepatocellular carcinoma
2018 Standout
Comparative Epigenomic Analysis of Murine and Human Adipogenesis
2010
Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression
2012
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia
2017 StandoutNobel
High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states
2013
Evolution of transcript modification by N6-methyladenosine in primates
2017
The role of genes domesticated from LTR retrotransposons and retroviruses in mammals
2012
Regulatory T Cells and Immune Tolerance
2008 StandoutNobel
Immune regulation in tumor-bearing hosts
2006
Hepatocellular carcinoma
2012 Standout
Gene Model 129 (Gm129) Encodes a Novel Transcriptional Repressor That Modulates Circadian Gene Expression
2014 StandoutNobel
Functional and Mechanistic Diversity of Distal Transcription Enhancers
2011
The Human Transcription Factors
2018 Standout
Personal and population genomics of human regulatory variation
2012
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Immunological landscape and immunotherapy of hepatocellular carcinoma
2015
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
Hypoxic Induction of the Regulator of G-Protein Signalling 4 Gene Is Mediated by the Hypoxia-Inducible Factor Pathway
2012
Macrophage Diversity Enhances Tumor Progression and Metastasis
2010 Standout
Dynamic RNA Modifications in Gene Expression Regulation
2017 Standout
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
Liver Transplantation for Hepatocellular Carcinoma
2008
Regulatory T cells and cancer
2007
Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver
2011
A map of the cis-regulatory sequences in the mouse genome
2012 Nature
Nuclear reprogramming in eggs
2009 StandoutNobel
Deletion of NEMO/IKKγ in Liver Parenchymal Cells Causes Steatohepatitis and Hepatocellular Carcinoma
2007
Control of DNA replication and its potential clinical exploitation
2005
NCBI GEO: archive for functional genomics data sets—update
2012 Standout
Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression
2011 StandoutNobel
Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence
2012
Archaerhodopsin variants with enhanced voltage-sensitive fluorescence in mammalian and Caenorhabditis elegans neurons
2014 StandoutNobel
Primary, Adaptive, and Acquired Resistance to Cancer Immunotherapy
2017 Standout
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
2012
Pioneer factors: directing transcriptional regulators within the chromatin environment
2011
Long-Term Expansion of Functional Mouse and Human Hepatocytes as 3D Organoids
2018 StandoutNobel
The blockade of immune checkpoints in cancer immunotherapy
2012 Standout
Enhancers: five essential questions
2013
The plasticity and stability of regulatory T cells
2013 StandoutNobel
Cholangiocytes act as facultative liver stem cells during impaired hepatocyte regeneration
2017 Nature
Intermediate Neuronal Progenitors (Basal Progenitors) Produce Pyramidal–Projection Neurons for All Layers of Cerebral Cortex
2009
Prognostic value of tumor-infiltrating FOXP3+ regulatory T cells in patients with hepatocellular carcinoma
2007
What We Talk About When We Talk About Fat
2014 Standout
Genomic Analysis Reveals a Potential Role for Cell Cycle Perturbation in HCV-Mediated Apoptosis of Cultured Hepatocytes
2009 StandoutNobel
Mechanisms for Insulin Resistance: Common Threads and Missing Links
2012 Standout
Dual modes of CLOCK:BMAL1 inhibition mediated by Cryptochrome and Period proteins in the mammalian circadian clock
2014 StandoutNobel
Topological domains in mammalian genomes identified by analysis of chromatin interactions
2012 StandoutNature
Microenvironmental regulation of tumor progression and metastasis
2013 Standout
Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment
2014 Standout
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
Long Noncoding RNAs: Cellular Address Codes in Development and Disease
2013 Standout
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
2012
Spatial partitioning of the regulatory landscape of the X-inactivation centre
2012 StandoutNature
CLOCK:BMAL1 is a pioneer-like transcription factor
2014 StandoutNobel
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Pembrolizumab versus Chemotherapy for PD-L1–Positive Non–Small-Cell Lung Cancer
2016 Standout
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
2013 Standout
Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
2015 StandoutNobel
Ionizable Lipid Nanoparticles for In Vivo mRNA Delivery to the Placenta during Pregnancy
2023 StandoutNobel
A mutation of Ikbkg causes immune deficiency without impairing degradation of IκBα
2010 StandoutNobel
Attenuation of CD8+ T-Cell Function by CD4+CD25+ Regulatory T Cells in B-Cell Non-Hodgkin's Lymphoma
2006
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
2012
Unbiased, Genome-Wide In Vivo Mapping of Transcriptional Regulatory Elements Reveals Sex Differences in Chromatin Structure Associated with Sex-Specific Liver Gene Expression
2010
Expansion of FOXP3high regulatory T cells by human dendritic cells (DCs) in vitro and after injection of cytokine-matured DCs in myeloma patients
2006 StandoutNobel
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
2017 StandoutScience
Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets
2014
Simultaneous inhibition of two regulatory T-cell subsets enhanced Interleukin-15 efficacy in a prostate tumor model
2012 StandoutNobel
oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets
2012
CD4+CD25high T Cells Are Enriched in the Tumor and Peripheral Blood of Prostate Cancer Patients
2006
Species-Specific Strategies Underlying Conserved Functions of Metabolic Transcription Factors
2011
Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal
2012 StandoutNobel
Intratumoral Balance of Regulatory and Cytotoxic T Cells Is Associated With Prognosis of Hepatocellular Carcinoma After Resection
2007
Activated monocytes in peritumoral stroma of hepatocellular carcinoma foster immune privilege and disease progression through PD-L1
2009
Works of Aileen Marshall being referenced
Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
2010 Science
Hepatocyte expression of minichromosome maintenance protein-2 predicts fibrosis progression after transplantation for chronic hepatitis C virus: A pilot study
2005
A novel immunohistochemical method to estimate cell‐cycle phase distribution in archival tissue: implications for the prediction of outcome in colorectal cancer
2003
Compromised lymphocytes infiltrate hepatocellular carcinoma
2005
Relation between hepatocyte G1 arrest, impaired hepatic regeneration, and fibrosis in chronic hepatitis C virus infection
2005
Tumour lymphocytic infiltrate and recurrence of hepatocellular carcinoma following liver transplantation
2006
Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
2012
Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
2012