Standout Papers
Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
2012 Standout
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
A noninflammatory mRNA vaccine for treatment of experimental autoimmune encephalomyelitis
2021 StandoutScienceNobel
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
2009 StandoutScience
PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
2015
FUNC: a package for detecting significant associations between gene sets and ontological annotations
2007 StandoutNobel
High-Definition Reconstruction of Clonal Composition in Cancer
2014
Gene ontology analysis for RNA-seq: accounting for selection bias
2010 Standout
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data
2006
Merkel Cells Activate Sensory Neural Pathways through Adrenergic Synapses
2018 StandoutNobel
Concerted changes in transcripts in the prefrontal cortex precede neuropathology in Alzheimer's disease
2010
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
N6-methyladenosine Modulates Messenger RNA Translation Efficiency
2015 Standout
The genomic landscape of Neanderthal ancestry in present-day humans
2014 StandoutNatureNobel
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
2017 Standout
Hallmarks of aging: An expanding universe
2023 Standout
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
2008 Standout
GSVA: gene set variation analysis for microarray and RNA-Seq data
2013 Standout
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
2011 Standout
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
2014 Standout
Hypoxia increases genome-wide bivalent epigenetic marking by specific gain of H3K27me3
2016
Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
2010 Standout
NuGO contributions to GenePattern
2008
Molecular and Genetic Properties of Tumors Associated with Local Immune Cytolytic Activity
2015 Standout
Dynamic RNA Modifications in Gene Expression Regulation
2017 Standout
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
Accounting for technical noise in single-cell RNA-seq experiments
2013
Metazoan MicroRNAs
2018 Standout
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
Revealing the human mucinome
2022 StandoutNobel
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data
2008
The pangenome of an agronomically important crop plant Brassica oleracea
2016 Standout
PINK1/Parkin-mediated mitophagy in mammalian cells
2015
Tumour heterogeneity and cancer cell plasticity
2013 StandoutNature
Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death
2015 StandoutNature
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
2015 Standout
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR–Cas9 library
2016
HTR7 Mediates Serotonergic Acute and Chronic Itch
2015
Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
2017 Standout
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
2007 Standout
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
2015 Standout
Fusobacterium nucleatum Promotes Chemoresistance to Colorectal Cancer by Modulating Autophagy
2017 Standout
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
2008
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
2013 Nature
Comprehensive Integration of Single-Cell Data
2019 Standout
Use and misuse of the gene ontology annotations
2008
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
Using GOstats to test gene lists for GO term association
2006 Standout
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
2012
FunNet: an integrative tool for exploring transcriptional interactions
2008
Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans
2014 StandoutNobel
Loss of conserved Gsdma3 self-regulation causes autophagy and cell death
2015
Transcriptional neoteny in the human brain
2009 StandoutNobel
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
Biological mechanisms of aging predict age‐related disease co‐occurrence in patients
2022
The Cardiac Transcription Network Modulated by Gata4, Mef2a, Nkx2.5, Srf, Histone Modifications, and MicroRNAs
2011
Spermidine in health and disease
2018 StandoutScience
Improved detection of overrepresentation of Gene-Ontology annotations with parent–child analysis
2007
Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories
2007
MiR-210 Is Induced by Oct-2, Regulates B Cells, and Inhibits Autoantibody Production
2013
Multi-omics enrichment analysis using the GeneTrail2 web service
2016
Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration
2008
A high-coverage Neandertal genome from Chagyrskaya Cave
2020 StandoutNobel
Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
2010 StandoutScienceNobel
Works of Adrian Alexa being referenced
Profiling of Parkin-Binding Partners Using Tandem Affinity Purification
2013
Monitoring chronic lymphocytic leukemia progression by whole genome sequencing reveals heterogeneous clonal evolution patterns
2012
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
2006 Standout