Citation Impact
Citing Papers
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae
2013
Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality
2020 StandoutNobel
The mutational landscape of phosphorylation signaling in cancer
2013
Differential network biology
2012
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Regulatory elements of Caenorhabditis elegans ribosomal protein genes
2012
Large‐scale survey and database of high affinity ligands for peptide recognition modules
2020
Systematic exploration of synergistic drug pairs
2011
Inference and analysis of cell-cell communication using CellChat
2021 Standout
Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53
2015
LinkedOmics: analyzing multi-omics data within and across 32 cancer types
2017 Standout
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
2016 Standout
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
A travel guide to Cytoscape plugins
2012
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015
2014
An Acquired and Endogenous Glycocalyx Forms a Bidirectional “Don’t Eat” and “Don’t Eat Me” Barrier to Phagocytosis
2020 StandoutNobel
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
2020 Standout
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants
2021
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
2016 Standout
ConsensusPathDB: toward a more complete picture of cell biology
2010
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
Reactome pathway analysis to enrich biological discovery in proteomics data sets
2011
HitPredict: a database of quality assessed protein–protein interactions in nine species
2010
The mini-driver model of polygenic cancer evolution
2015 StandoutNobel
The Human Transcription Factors
2018 Standout
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
2015 Standout
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
Cellular senescence in ageing: from mechanisms to therapeutic opportunities
2020 Standout
High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies
2018
PomBase 2015: updates to the fission yeast database
2014
High-performance medicine: the convergence of human and artificial intelligence
2018 Standout
Systematic Evaluation of Molecular Networks for Discovery of Disease Genes
2018
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
2012 StandoutNobel
Multiple small RNA pathways regulate the silencing of repeated and foreign genes in C. elegans
2013 StandoutNobel
2016 update of the PRIDE database and its related tools
2015 Standout
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
2018
Brown adipose tissue thermogenic adaptation requires Nrf1-mediated proteasomal activity
2018 StandoutNobel
TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins
2010
Network-Based Approaches for Multi-omics Integration
2020
The computational prediction of protein assemblies
2017
Biophysical prediction of protein–peptide interactions and signaling networks using machine learning
2020
The Emerging Hallmarks of Cancer Metabolism
2016 Standout
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit
2017
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Understanding multicellular function and disease with human tissue-specific networks
2015
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity
2024 StandoutNobel
The Mnn2 Mannosyltransferase Family Modulates Mannoprotein Fibril Length, Immune Recognition and Virulence of Candida albicans
2013
Pathway and network analysis of cancer genomes
2015
Reading, writing and erasing mRNA methylation
2019 Standout
Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same
2010
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
FunCoup 4: new species, data, and visualization
2017
PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
2014 Standout
The prognostic landscape of genes and infiltrating immune cells across human cancers
2015 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
Next-Generation Machine Learning for Biological Networks
2018
Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19
2020 Standout
Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes
2018
Sterol Regulatory Element Binding Proteins in Fungi: Hypoxic Transcription Factors Linked to Pathogenesis
2010
Genome-wide functional association networks: background, data & state-of-the-art resources
2019
The EMBL-EBI search and sequence analysis tools APIs in 2019
2019 Standout
IMID: integrated molecular interaction database
2012
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data
2018
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks
2023 StandoutNobel
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Natural products of filamentous fungi: enzymes, genes, and their regulation
2006
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
2019 Standout
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
2020
Systems cell biology
2014
Similarity-based machine learning methods for predicting drug–target interactions: a brief review
2013
Impact of Natural Products on Developing New Anti-Cancer Agents
2009 Standout
Network-assisted analysis to prioritize GWAS results: principles, methods and perspectives
2013
IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species
2018
GeneMANIA Prediction Server 2013 Update
2013
The identification of short linear motif-mediated interfaces within the human interactome
2012
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
2019 Standout
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
The BioGRID interaction database: 2019 update
2018
OGFOD1 catalyzes prolyl hydroxylation of RPS23 and is involved in translation control and stress granule formation
2014 StandoutNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Adnane Sellam being referenced
The BioGRID interaction database: 2017 update
2016
Evolutionary Tinkering with Conserved Components of a Transcriptional Regulatory Network
2010
Widespread occurrence of chromosomal aneuploidy following the routine production ofCandida albicansmutants
2009
The BioGRID interaction database: 2013 update
2012
Analysis of a nonribosomal peptide synthetase gene from Alternaria brassicae and flanking genomic sequences
2004
Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
2008
Transcriptional Regulation of Carbohydrate Metabolism in the Human Pathogen Candida albicans
2009